PDB entry 4orz
View 4orz on RCSB PDB site
Description: HIV-1 Nef protein in complex with single domain antibody sdAb19 and an engineered Hck SH3 domain
Class: transferase/apoptosis/immune system
Keywords: SH3 domain, immunglobolin fold, Antibodies, Epitopes, HIV Antibodies, HIV Accessory Proteins, PxxP motif, Complementarity Determining Regions, TRANSFERASE-APOPTOSIS-IMMUNE SYSTEM complex
Deposited on
2014-02-12, released
2014-03-26
The last revision prior to the SCOPe 2.07 freeze date was dated
2014-03-26, with a file datestamp of
2014-03-21.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.204
AEROSPACI score: 0.35
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Tyrosine-protein kinase HCK
Species: Homo sapiens [TaxId:9606]
Gene: HCK
Database cross-references and differences (RAF-indexed):
- Uniprot P08631
- engineered mutation (18-23)
Domains in SCOPe 2.07: d4orza_ - Chain 'B':
Compound: Protein Nef
Species: HIV-1 M:B_ARV2/SF2 [TaxId:11685]
Gene: nef
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d4orzb_ - Chain 'C':
Compound: single domain antibody sdAb19
Species: Lama glama [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d4orzc_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4orzA (A:)
gahmggsediivvalydyyspfswdlsfqkgdqmvvleesgewwkarslatrkegyipsn
yvarvds
Sequence, based on observed residues (ATOM records): (download)
>4orzA (A:)
iivvalydyyspfswdlsfqkgdqmvvleesgewwkarslatrkegyipsnyvarv
- Chain 'B':
Sequence, based on SEQRES records: (download)
>4orzB (B:)
gamassntaatnadsawleaqeeeevgfpvrpqvplrpmtykaaldishflkekgglegl
iwsqrrqeildlwiyhtqgyfpdwqnytpgpgirypltfgwcfklvpvepekvdaekevl
vwrfdsklafhhmarelhpeyykda
Sequence, based on observed residues (ATOM records): (download)
>4orzB (B:)
gfpvrpqvplrpmtykaaldishflkekgglegliwsqrrqeildlwiyhtqgyfpdwqn
ytpgpgirypltfgwcfklvpvepekvdaekevlvwrfdsklafhhmarelhpeyyk
- Chain 'C':
Sequence, based on SEQRES records: (download)
>4orzC (C:)
gamaevqlvesggglvqaggslrlfcaasgftfgtsnmawlrqapgkrrewvalitisgy
tdyadsvkdrftisrdnakntvslqmnslkpedtaiyfcarrvgseydlwgqgtqvtvss
Sequence, based on observed residues (ATOM records): (download)
>4orzC (C:)
qlvesggglvqaggslrlfcaasgftfgtsnmawlrqapgkrrewvalitisgytdyads
vkdrftisrdnakntvslqmnslkpedtaiyfcarrvgseydlwgqgtqvtvss