PDB entry 4oqw

View 4oqw on RCSB PDB site
Description: Crystal structure of mCardinal far-red fluorescent protein
Class: fluorescent protein
Keywords: fluorescent protein
Deposited on 2014-02-10, released 2014-03-12
The last revision prior to the SCOPe 2.08 freeze date was dated 2014-05-14, with a file datestamp of 2014-05-09.
Experiment type: XRAY
Resolution: 2.21 Å
R-factor: 0.225
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Fluorescent protein FP480
    Species: Entacmaea quadricolor [TaxId:6118]
    Database cross-references and differences (RAF-indexed):
    • Uniprot D0VX33 (4-229)
      • expression tag (2-3)
      • conflict (7)
      • conflict (29)
      • conflict (62)
      • chromophore (64)
      • conflict (68)
      • conflict (81)
      • conflict (105)
      • conflict (122)
      • conflict (144)
      • conflict (147)
      • conflict (159)
      • conflict (161)
      • conflict (172)
      • conflict (175)
      • conflict (195)
      • conflict (198)
      • conflict (208)
    Domains in SCOPe 2.08: d4oqwa1, d4oqwa2
  • Chain 'B':
    Compound: Fluorescent protein FP480
    Species: Entacmaea quadricolor [TaxId:6118]
    Database cross-references and differences (RAF-indexed):
    • Uniprot D0VX33 (4-End)
      • expression tag (2-3)
      • conflict (7)
      • conflict (29)
      • conflict (62)
      • chromophore (64)
      • conflict (68)
      • conflict (81)
      • conflict (105)
      • conflict (122)
      • conflict (144)
      • conflict (147)
      • conflict (159)
      • conflict (161)
      • conflict (172)
      • conflict (175)
      • conflict (195)
      • conflict (198)
      • conflict (208)
    Domains in SCOPe 2.08: d4oqwb1, d4oqwb2
  • Chain 'C':
    Compound: Fluorescent protein FP480
    Species: Entacmaea quadricolor [TaxId:6118]
    Database cross-references and differences (RAF-indexed):
    • Uniprot D0VX33 (Start-229)
      • conflict (7)
      • conflict (29)
      • conflict (62)
      • chromophore (64)
      • conflict (68)
      • conflict (81)
      • conflict (105)
      • conflict (122)
      • conflict (144)
      • conflict (147)
      • conflict (159)
      • conflict (161)
      • conflict (172)
      • conflict (175)
      • conflict (195)
      • conflict (198)
      • conflict (208)
    Domains in SCOPe 2.08: d4oqwc_
  • Chain 'D':
    Compound: Fluorescent protein FP480
    Species: Entacmaea quadricolor [TaxId:6118]
    Database cross-references and differences (RAF-indexed):
    • Uniprot D0VX33 (4-End)
      • expression tag (0-3)
      • conflict (7)
      • conflict (29)
      • conflict (62)
      • chromophore (64)
      • conflict (68)
      • conflict (81)
      • conflict (105)
      • conflict (122)
      • conflict (144)
      • conflict (147)
      • conflict (159)
      • conflict (161)
      • conflict (172)
      • conflict (175)
      • conflict (195)
      • conflict (198)
      • conflict (208)
    Domains in SCOPe 2.08: d4oqwd1, d4oqwd2
  • Chain 'E':
    Compound: Fluorescent protein FP480
    Species: Entacmaea quadricolor [TaxId:6118]
    Database cross-references and differences (RAF-indexed):
    • Uniprot D0VX33 (4-End)
      • expression tag (3)
      • conflict (7)
      • conflict (29)
      • conflict (62)
      • chromophore (64)
      • conflict (68)
      • conflict (81)
      • conflict (105)
      • conflict (122)
      • conflict (144)
      • conflict (147)
      • conflict (159)
      • conflict (161)
      • conflict (172)
      • conflict (175)
      • conflict (195)
      • conflict (198)
    Domains in SCOPe 2.08: d4oqwe1, d4oqwe2
  • Chain 'F':
    Compound: Fluorescent protein FP480
    Species: Entacmaea quadricolor [TaxId:6118]
    Database cross-references and differences (RAF-indexed):
    • Uniprot D0VX33
      • conflict (7)
      • conflict (29)
      • conflict (62)
      • chromophore (64)
      • conflict (68)
      • conflict (81)
      • conflict (105)
      • conflict (122)
      • conflict (144)
      • conflict (147)
      • conflict (159)
      • conflict (161)
      • conflict (172)
      • conflict (175)
      • conflict (195)
      • conflict (198)
      • conflict (208)
    Domains in SCOPe 2.08: d4oqwf_
  • Chain 'G':
    Compound: Fluorescent protein FP480
    Species: Entacmaea quadricolor [TaxId:6118]
    Database cross-references and differences (RAF-indexed):
    • Uniprot D0VX33 (4-End)
      • expression tag (3)
      • conflict (7)
      • conflict (29)
      • conflict (62)
      • chromophore (64)
      • conflict (68)
      • conflict (81)
      • conflict (105)
      • conflict (122)
      • conflict (144)
      • conflict (147)
      • conflict (159)
      • conflict (161)
      • conflict (172)
      • conflict (175)
      • conflict (195)
      • conflict (198)
      • conflict (208)
    Domains in SCOPe 2.08: d4oqwg1, d4oqwg2
  • Chain 'H':
    Compound: Fluorescent protein FP480
    Species: Entacmaea quadricolor [TaxId:6118]
    Database cross-references and differences (RAF-indexed):
    • Uniprot D0VX33 (4-End)
      • expression tag (2-3)
      • conflict (7)
      • conflict (29)
      • conflict (62)
      • chromophore (64)
      • conflict (68)
      • conflict (81)
      • conflict (105)
      • conflict (144)
      • conflict (147)
      • conflict (159)
      • conflict (161)
      • conflict (172)
      • conflict (175)
      • conflict (195)
      • conflict (198)
      • conflict (208)
    Domains in SCOPe 2.08: d4oqwh1, d4oqwh2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4oqwA (A:)
skgeelikenmhmklymegtvnnhhfkcttegegkpyegtqtqrikvveggplpfafdil
atcfmygsktfinhtqgipdffkqsfpegftwervttyedggvltvtqdtslqdgcliyn
vklrgvnfpsngpvmqkktlgweattetlypadgglegrcdmalklvggghlhcnlktty
rskkpaknlkmpgvyfvdrrlerikeadnetyveqhevavarycdlpskl

    Sequence, based on observed residues (ATOM records): (download) 
    >4oqwA (A:)
geelikenmhmklymegtvnnhhfkcttegegkpyegtqtqrikvveggplpfafdilat
cfmygsktfinhtqgipdffkqsfpegftwervttyedggvltvtqdtslqdgcliynvk
lrgvnfpsngpvmqkktlgweattetlypadgglegrcdmalklvggghlhcnlkttyrs
kkpaknlkmpgvyfvdrrlerikeadnetyveqhevavarycdlpskl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4oqwB (B:)
skgeelikenmhmklymegtvnnhhfkcttegegkpyegtqtqrikvveggplpfafdil
atcfmygsktfinhtqgipdffkqsfpegftwervttyedggvltvtqdtslqdgcliyn
vklrgvnfpsngpvmqkktlgweattetlypadgglegrcdmalklvggghlhcnlktty
rskkpaknlkmpgvyfvdrrlerikeadnetyveqhevavarycdlpskl

    Sequence, based on observed residues (ATOM records): (download) 
    >4oqwB (B:)
geelikenmhmklymegtvnnhhfkcttegegkpyegtqtqrikvveggplpfafdilat
cfmygsktfinhtqgipdffkqsfpegftwervttyedggvltvtqdtslqdgcliynvk
lrgvnfpsngpvmqkktlgweattetlypadgglegrcdmalklvggghlhcnlkttyrs
kkpaknlkmpgvyfvdrrlerikeadnetyveqhevavarycdlps

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4oqwC (C:)
skgeelikenmhmklymegtvnnhhfkcttegegkpyegtqtqrikvveggplpfafdil
atcfmygsktfinhtqgipdffkqsfpegftwervttyedggvltvtqdtslqdgcliyn
vklrgvnfpsngpvmqkktlgweattetlypadgglegrcdmalklvggghlhcnlktty
rskkpaknlkmpgvyfvdrrlerikeadnetyveqhevavarycdlpskl

    Sequence, based on observed residues (ATOM records): (download) 
    >4oqwC (C:)
likenmhmklymegtvnnhhfkcttegegkpyegtqtqrikvveggplpfafdilatcfm
ygsktfinhtqgipdffkqsfpegftwervttyedggvltvtqdtslqdgcliynvklrg
vnfpsngpvmqkktlgweattetlypadgglegrcdmalklvggghlhcnlkttyrskkp
aknlkmpgvyfvdrrlerikeadnetyveqhevavarycdlpskl

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4oqwD (D:)
skgeelikenmhmklymegtvnnhhfkcttegegkpyegtqtqrikvveggplpfafdil
atcfmygsktfinhtqgipdffkqsfpegftwervttyedggvltvtqdtslqdgcliyn
vklrgvnfpsngpvmqkktlgweattetlypadgglegrcdmalklvggghlhcnlktty
rskkpaknlkmpgvyfvdrrlerikeadnetyveqhevavarycdlpskl

    Sequence, based on observed residues (ATOM records): (download) 
    >4oqwD (D:)
skgeelikenmhmklymegtvnnhhfkcttegegkpyegtqtqrikvveggplpfafdil
atcfmygsktfinhtqgipdffkqsfpegftwervttyedggvltvtqdtslqdgcliyn
vklrgvnfpsngpvmqkktlgweattetlypadgglegrcdmalklvggghlhcnlktty
rskkpaknlkmpgvyfvdrrlerikeadnetyveqhevavarycdlps

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4oqwE (E:)
skgeelikenmhmklymegtvnnhhfkcttegegkpyegtqtqrikvveggplpfafdil
atcfmygsktfinhtqgipdffkqsfpegftwervttyedggvltvtqdtslqdgcliyn
vklrgvnfpsngpvmqkktlgweattetlypadgglegrcdmalklvggghlhcnlktty
rskkpaknlkmpgvyfvdrrlerikeadnetyveqhevavarycdlpskl

    Sequence, based on observed residues (ATOM records): (download) 
    >4oqwE (E:)
eelikenmhmklymegtvnnhhfkcttegegkpyegtqtqrikvveggplpfafdilatc
fmygsktfinhtqgipdffkqsfpegftwervttyedggvltvtqdtslqdgcliynvkl
rgvnfpsngpvmqkktlgweattetlypaglegrcdmalklvggglhcnlkttyrskkpa
klkmpgvyfvdrrlerikeatyveqhevavarycdl

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4oqwF (F:)
skgeelikenmhmklymegtvnnhhfkcttegegkpyegtqtqrikvveggplpfafdil
atcfmygsktfinhtqgipdffkqsfpegftwervttyedggvltvtqdtslqdgcliyn
vklrgvnfpsngpvmqkktlgweattetlypadgglegrcdmalklvggghlhcnlktty
rskkpaknlkmpgvyfvdrrlerikeadnetyveqhevavarycdlpskl

    Sequence, based on observed residues (ATOM records): (download) 
    >4oqwF (F:)
ikenmhmklymegtvnnhhfkcttegegkpyegtqtqrikvveggplpfafdilatcfmy
gsktfinhgipdffkqsfpegftwervttyedggvltvtqdtslqdgcliynvklrgvnf
psngpvmqkktlgweattetlypadgglegrcdmalklvggghlhcnlkttyrskkpakn
lkmpgvyfvdrrlerikeadnetyveqhvavarycdl

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >4oqwG (G:)
skgeelikenmhmklymegtvnnhhfkcttegegkpyegtqtqrikvveggplpfafdil
atcfmygsktfinhtqgipdffkqsfpegftwervttyedggvltvtqdtslqdgcliyn
vklrgvnfpsngpvmqkktlgweattetlypadgglegrcdmalklvggghlhcnlktty
rskkpaknlkmpgvyfvdrrlerikeadnetyveqhevavarycdlpskl

    Sequence, based on observed residues (ATOM records): (download) 
    >4oqwG (G:)
eelikenmhmklymegtvhhfkcttegegkpyegtqtqrikvveggplfafdilatcfmy
gsktfinhtqgipdffkqsfpegftwervttyedggvlvtqdtslqdgcliynvklrvnf
psngpvmqkktlgweattetlylegrcdmalklvggghlhcnlkttyrskkpaknlkmpg
vyfvdrrlerikeadnetyeqhevavarycdlps

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >4oqwH (H:)
skgeelikenmhmklymegtvnnhhfkcttegegkpyegtqtqrikvveggplpfafdil
atcfmygsktfinhtqgipdffkqsfpegftwervttyedggvltvtqdtslqdgcliyn
vklrgvnfpsngpvmqkktlgweattetlypadgglegrcdmalklvggghlhcnlktty
rskkpaknlkmpgvyfvdrrlerikeadnetyveqhevavarycdlpskl

    Sequence, based on observed residues (ATOM records): (download) 
    >4oqwH (H:)
geelikenmhmklymegtfkcttegegkpyegtqtqrikvveggpfafdiltcfmygskt
finhtqgipdffkqsfpegftwerttyedggvltvdtslqdgcliynfpsngmqkktlgw
eattetlypadgglegrcdmalklvghlhcnlkttyrskkknlkmpgvyfvdrerkeadn
etyveqhevavarycdlp