PDB entry 4oqn

View 4oqn on RCSB PDB site
Description: Crystal structure of thymidine kinase from herpes simplex virus type 1 in complex with EdU
Class: transferase
Keywords: DNA synthesis, thymidine kinase, ATP-binding, nucleotide-binding, transferase, 5-ethynyluridine nucleoside derivative
Deposited on 2014-02-10, released 2014-08-13
The last revision prior to the SCOPe 2.07 freeze date was dated 2014-08-13, with a file datestamp of 2014-08-08.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.189
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Thymidine kinase
    Species: Human herpesvirus 1 [TaxId:10299]
    Gene: TK, TK (UL23), UL23
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4oqna_
  • Chain 'B':
    Compound: Thymidine kinase
    Species: Human herpesvirus 1 [TaxId:10299]
    Gene: TK, TK (UL23), UL23
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4oqnb_
  • Heterogens: SO4, EDU, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >4oqnA (A:)
    kmptllrvyidgphgmgkttttqllvalgsrddivyvpepmtywrvlgasetianiyttq
    hrldqgeisagdaavvmtsaqitmgmpyavtdavlaphiggeagsshapppaltlifdrh
    piaallcypaarylmgsmtpqavlafvalipptlpgtnivlgalpedrhidrlakrqrpg
    erldlamlaairrvygllantvrylqcggswredwgqlsgtavppqgaepqsnagprphi
    gdtlftlfrapellapngdlynvfawaldvlakrlrsmhvfildydqspagcrdallqlt
    sgmvqthvttpgsipticdlartfaremgean
    

    Sequence, based on observed residues (ATOM records): (download)
    >4oqnA (A:)
    kmptllrvyidgphgmgkttttqllvalgsrddivyvpepmtywrvlgasetianiyttq
    hrldqgeisagdaavvmtsaqitmgmpyavtdavlaphiggeapppaltlifdrhpiaal
    lcypaarylmgsmtpqavlafvalipptlpgtnivlgalpedrhidrlakrqrpgerldl
    amlaairrvygllantvrylqcggswredwgqlsgprphigdtlftlfrapellapngdl
    ynvfawaldvlakrlrsmhvfildydqspagcrdallqltsgmvqthvttpgsipticdl
    artfaremge
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >4oqnB (B:)
    kmptllrvyidgphgmgkttttqllvalgsrddivyvpepmtywrvlgasetianiyttq
    hrldqgeisagdaavvmtsaqitmgmpyavtdavlaphiggeagsshapppaltlifdrh
    piaallcypaarylmgsmtpqavlafvalipptlpgtnivlgalpedrhidrlakrqrpg
    erldlamlaairrvygllantvrylqcggswredwgqlsgtavppqgaepqsnagprphi
    gdtlftlfrapellapngdlynvfawaldvlakrlrsmhvfildydqspagcrdallqlt
    sgmvqthvttpgsipticdlartfaremgean
    

    Sequence, based on observed residues (ATOM records): (download)
    >4oqnB (B:)
    mptllrvyidgphgmgkttttqllvalgsrddivyvpepmtywrvlgasetianiyttqh
    rldqgeisagdaavvmtsaqitmgmpyavtdavlaphiggeapppaltlifdrhpiaall
    cypaarylmgsmtpqavlafvalipptlpgtnivlgalpedrhidrlakrqrpgerldla
    mlaairrvygllantvrylqcggswredwgqlsgpqsnagprphigdtlftlfrapella
    pngdlynvfawaldvlakrlrsmhvfildydqspagcrdallqltsgmvqthvttpgsip
    ticdlartfaremge