PDB entry 4oqd

View 4oqd on RCSB PDB site
Description: Crystal structure of the tylM1 N,N-dimethyltransferase in complex with SAH and TDP-Qui3NMe2
Deposited on 2014-02-08, released 2014-02-26
The last revision was dated 2014-03-19, with a file datestamp of 2014-03-14.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: 0.182
AEROSPACI score: 0.5 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: dTDP-3-amino-3,6-dideoxy-alpha-D-glucopyranose N,N-dimethyltransferase
    Species: Streptomyces fradiae [TaxId:1906]
    Gene: tylM1, tylMI
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: dTDP-3-amino-3,6-dideoxy-alpha-D-glucopyranose N,N-dimethyltransferase
    Species: Streptomyces fradiae [TaxId:1906]
    Gene: tylM1, tylMI
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: dTDP-3-amino-3,6-dideoxy-alpha-D-glucopyranose N,N-dimethyltransferase
    Species: Streptomyces fradiae [TaxId:1906]
    Gene: tylM1, tylMI
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: dTDP-3-amino-3,6-dideoxy-alpha-D-glucopyranose N,N-dimethyltransferase
    Species: Streptomyces fradiae [TaxId:1906]
    Gene: tylM1, tylMI
    Database cross-references and differences (RAF-indexed):
  • Heterogens: SAH, QDM, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4oqdA (A:)
mahssatagpqadysgeiaelydlvhqgkgkdyhreaadlaalvrrhspkaaslldvacg
tgmhlrhladsfgtveglelsadmlaiarrrnpdavlhhgdmrdfslgrrfsavtcmfss
ighlagqaeldaalerfaahvlpdgvvvvepwwfpenftpgyvaagtveaggttvtrvsh
ssregeatrievhylvagpdrgithheeshritlftreqyeraftaaglsvefmpggpsg
rglftglpgakgetrlehhhhhh

    Sequence, based on observed residues (ATOM records):
    >4oqdA (A:)
adysgeiaelydlvhqgkgkdyhreaadlaalvrrhspkaaslldvacgtgmhlrhlads
fgtveglelsadmlaiarrrnpdavlhhgdmrdfslgrrfsavtcmfssighlagqaeld
aalerfaahvlpdgvvvvepwwfpenftpgyvaagtveaggttvtrvshssregeatrie
vhylvagpdrgithheeshritlftreqyeraftaaglsvefmpggpsgrglftglpga

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4oqdB (B:)
mahssatagpqadysgeiaelydlvhqgkgkdyhreaadlaalvrrhspkaaslldvacg
tgmhlrhladsfgtveglelsadmlaiarrrnpdavlhhgdmrdfslgrrfsavtcmfss
ighlagqaeldaalerfaahvlpdgvvvvepwwfpenftpgyvaagtveaggttvtrvsh
ssregeatrievhylvagpdrgithheeshritlftreqyeraftaaglsvefmpggpsg
rglftglpgakgetrlehhhhhh

    Sequence, based on observed residues (ATOM records):
    >4oqdB (B:)
pqadysgeiaelydlvhqgkgkdyhreaadlaalvrrhspkaaslldvacgtgmhlrhla
dsfgtveglelsadmlaiarrrnpdavlhhgdmrdfslgrrfsavtcmfssighlagqae
ldaalerfaahvlpdgvvvvepwwfpenftpgyvaagtveaggttvtrvshssregeatr
ievhylvagpdrgithheeshritlftreqyeraftaaglsvefmpggpsgrglftglpg

  • Chain 'C':
    Sequence, based on SEQRES records:
    >4oqdC (C:)
mahssatagpqadysgeiaelydlvhqgkgkdyhreaadlaalvrrhspkaaslldvacg
tgmhlrhladsfgtveglelsadmlaiarrrnpdavlhhgdmrdfslgrrfsavtcmfss
ighlagqaeldaalerfaahvlpdgvvvvepwwfpenftpgyvaagtveaggttvtrvsh
ssregeatrievhylvagpdrgithheeshritlftreqyeraftaaglsvefmpggpsg
rglftglpgakgetrlehhhhhh

    Sequence, based on observed residues (ATOM records):
    >4oqdC (C:)
gpqadysgeiaelydlvhqgkgkdyhreaadlaalvrrhspkaaslldvacgtgmhlrhl
adsfgtveglelsadmlaiarrrnpdavlhhgdmrdfslgrrfsavtcmfssighlagqa
eldaalerfaahvlpdgvvvvepwwfpenftpgyvaagtveaggttvtrvshssregeat
rievhylvagpdrgithheeshritlftreqyeraftaaglsvefmpggpsgrglftglp
g

  • Chain 'D':
    Sequence, based on SEQRES records:
    >4oqdD (D:)
mahssatagpqadysgeiaelydlvhqgkgkdyhreaadlaalvrrhspkaaslldvacg
tgmhlrhladsfgtveglelsadmlaiarrrnpdavlhhgdmrdfslgrrfsavtcmfss
ighlagqaeldaalerfaahvlpdgvvvvepwwfpenftpgyvaagtveaggttvtrvsh
ssregeatrievhylvagpdrgithheeshritlftreqyeraftaaglsvefmpggpsg
rglftglpgakgetrlehhhhhh

    Sequence, based on observed residues (ATOM records):
    >4oqdD (D:)
pqadysgeiaelydlvhqgkgkdyhreaadlaalvrrhspkaaslldvacgtgmhlrhla
dsfgtveglelsadmlaiarrrnpdavlhhgdmrdfslgrrfsavtcmfssighlagqae
ldaalerfaahvlpdgvvvvepwwfpenftpgyvaagtveaggttvtrvshssregeatr
ievhylvagpdrgithheeshritlftreqyeraftaaglsvefmpggpsgrglftglpg