PDB entry 4opo

View 4opo on RCSB PDB site
Description: Crystal structure of P domain from norovirus strain Saga4 in complex with HBGA type Leb (tetraglycan)
Class: viral protein
Keywords: Norovirus, Viral Capsid Protein, Histo Blood Group Antigen (HBGA), Protruding Domain, Viral Protein
Deposited on 2014-02-06, released 2014-12-17
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-09.
Experiment type: XRAY
Resolution: 1.4 Å
R-factor: N/A
AEROSPACI score: 0.61 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: vp1
    Species: Norovirus Hu/GII-4/Kumamoto5/2006/JP [TaxId:546987]
    Gene: AB447457
    Database cross-references and differences (RAF-indexed):
    • Uniprot B5BTT5 (3-308)
      • expression tag (0-2)
    Domains in SCOPe 2.08: d4opoa1, d4opoa2
  • Chain 'B':
    Compound: vp1
    Species: Norovirus Hu/GII-4/Kumamoto5/2006/JP [TaxId:546987]
    Gene: AB447457
    Database cross-references and differences (RAF-indexed):
    • Uniprot B5BTT5 (3-308)
      • expression tag (2)
    Domains in SCOPe 2.08: d4opob1, d4opob2
  • Heterogens: ACT, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4opoA (A:)
tgskpftvpiltveemtnsrfpipleklftgpsgafvvqpqngrcttdgvllgttqlspv
nictfrgdvthiagsrnytmnlaslnwnnydpteeipaplgtpdfvgkiqglltqttkgd
gstrghkatvytgsapftpklgsvqfstdtendfethqntkftpvgviqdgstthrnepq
qwvlpsysgrnvhnvhlapavaptfpgeqllffrstmpgcsgypnmdldcllpqewvqhf
yqeaapaqsdvallrfvnpdtgrvlfecklhksgyvtvahtgqhdlvippngyfrfdswv
nqfytlapm

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4opoB (B:)
tgskpftvpiltveemtnsrfpipleklftgpsgafvvqpqngrcttdgvllgttqlspv
nictfrgdvthiagsrnytmnlaslnwnnydpteeipaplgtpdfvgkiqglltqttkgd
gstrghkatvytgsapftpklgsvqfstdtendfethqntkftpvgviqdgstthrnepq
qwvlpsysgrnvhnvhlapavaptfpgeqllffrstmpgcsgypnmdldcllpqewvqhf
yqeaapaqsdvallrfvnpdtgrvlfecklhksgyvtvahtgqhdlvippngyfrfdswv
nqfytlapm

    Sequence, based on observed residues (ATOM records): (download) 
    >4opoB (B:)
skpftvpiltveemtnsrfpipleklftgpsgafvvqpqngrcttdgvllgttqlspvni
ctfrgdvthiagsrnytmnlaslnwnnydpteeipaplgtpdfvgkiqglltqttkgdgs
trghkatvytgsapftpklgsvqfstdtendfethqntkftpvgviqdgstthrnepqqw
vlpsysgrnvhnvhlapavaptfpgeqllffrstmpgcsgypnmdldcllpqewvqhfyq
eaapaqsdvallrfvnpdtgrvlfecklhksgyvtvahtgqhdlvippngyfrfdswvnq
fytlapm