PDB entry 4opk

View 4opk on RCSB PDB site
Description: Bh-RNaseH:2'-SMe-DNA complex
Class: hydrolase/DNA
Keywords: Bh RNase-H:DNA complex, protein-DNA complex, RNase H, Ribonuclease H, 2'thiomethyl DNA, HYDROLASE-DNA complex
Deposited on 2014-02-05, released 2015-02-11
The last revision prior to the SCOPe 2.06 freeze date was dated 2015-08-12, with a file datestamp of 2015-08-07.
Experiment type: XRAY
Resolution: 1.54 Å
R-factor: N/A
AEROSPACI score: 0.46 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ribonuclease H
    Species: Bacillus halodurans [TaxId:86665]
    Gene: BH0863, rnhA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9KEI9
      • engineered mutation (77)
    Domains in SCOPe 2.06: d4opka_
  • Chain 'B':
    Compound: 5'-d(*cp*gp*cp*gp*ap*ap*(usm)p*tp*cp*gp*cp*g)-3'
  • Chain 'C':
    Compound: Ribonuclease H
    Species: Bacillus halodurans [TaxId:86665]
    Gene: BH0863, rnhA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9KEI9
      • engineered mutation (77)
    Domains in SCOPe 2.06: d4opkc_
  • Chain 'D':
    Compound: 5'-d(*cp*gp*cp*gp*ap*ap*(usm)p*tp*cp*gp*cp*g)-3'
  • Heterogens: GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4opkA (A:)
gshmakeeiiweslsvdvgsqgnpgiveykgvdtktgevlferepipigtnnmgeflaiv
hglrylkernsrkpiysnsqtaikwvkdkkakstlvrneetaliwklvdeaeewlnthty
etpilkwqtdkwgeikadygrk

    Sequence, based on observed residues (ATOM records): (download) 
    >4opkA (A:)
eiiweslsvdvgsqgnpgiveykgvdtktgevlferepipigtnnmgeflaivhglrylk
ernsrkpiysnsqtaikwvkdkkakstlvrneetaliwklvdeaeewlnthtyetpilkw
qtdkwgeikadyg

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4opkC (C:)
gshmakeeiiweslsvdvgsqgnpgiveykgvdtktgevlferepipigtnnmgeflaiv
hglrylkernsrkpiysnsqtaikwvkdkkakstlvrneetaliwklvdeaeewlnthty
etpilkwqtdkwgeikadygrk

    Sequence, based on observed residues (ATOM records): (download) 
    >4opkC (C:)
eiiweslsvdvgsqgnpgiveykgvdtktgevlferepipigtnnmgeflaivhglrylk
ernsrkpiysnsqtaikwvkdkkakstlvrneetaliwklvdeaeewlnthtyetpilkw
qtdkwgeikadyg

  • Chain 'D':
    No sequence available.