PDB entry 4ol8

View 4ol8 on RCSB PDB site
Description: Ty3 reverse transcriptase bound to DNA/RNA
Deposited on 2014-01-23, released 2014-03-05
The last revision was dated 2014-04-16, with a file datestamp of 2014-04-11.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: 0.231
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Reverse transcriptase/ribonuclease H
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: TY3B-G, YGRWTy3-1 POL, YGR109W-B, G5984
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q99315
      • engineered mutation (427)
  • Chain 'B':
    Compound: Reverse transcriptase/ribonuclease H
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: TY3B-G, YGRWTy3-1 POL, YGR109W-B, G5984
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q99315 (Start-477)
      • engineered mutation (427)
  • Chain 'C':
    Compound: 5'-r(*cp*up*gp*ap*gp*ap*gp*ap*gp*ap*gp*gp*ap*ap*gp*ap*up*g)-3'
  • Chain 'D':
    Compound: 5'-d(*cp*ap*tp*cp*tp*tp*cp*cp*tp*cp*tp*cp*tp*cp*tp*c)-3'
  • Chain 'E':
    Compound: Reverse transcriptase/ribonuclease H
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: TY3B-G, YGRWTy3-1 POL, YGR109W-B, G5984
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q99315
      • engineered mutation (427)
  • Chain 'F':
    Compound: Reverse transcriptase/ribonuclease H
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: TY3B-G, YGRWTy3-1 POL, YGR109W-B, G5984
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q99315
      • engineered mutation (427)
  • Chain 'G':
    Compound: 5'-r(*cp*up*gp*ap*gp*ap*gp*ap*gp*ap*gp*gp*ap*ap*gp*ap*up*g)-3'
  • Chain 'H':
    Compound: 5'-d(*cp*ap*tp*cp*tp*tp*cp*cp*tp*cp*tp*cp*tp*cp*tp*c)-3'
  • Heterogens: SO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4ol8A (A:)
gptiqsvepnatdhsnkdtfctlpvwlqqkyreiirndlpprpadinnipvkhdieikpg
arlprlqpyhvtekneqeinkivqklldnkfivpskspcsspvvlvpkkdgtfrlcvdyr
tlnkatisdpfplpridnllsrignaqifttldlhsgyhqipmepkdryktafvtpsgky
eytvmpfglvnapstfarymadtfrdlrfvnvylddilifsespeehwkhldtvlerlkn
enlivkkkkckfaseeteflgysigiqkiaplqhkcaairdfptpktvkqaqrflgminy
yrrfipncskiaqpiqlficdksqwtekqdkaidklkdalcnspvlvpfnnkanyrlttd
askdgigavleevdnknklvgvvgyfskslesaqknypagelellgiikalhhfrymlhg
khftlrtnhisllslqnkneparrvqrwlddlatydftleylagpknvvadaisravy

    Sequence, based on observed residues (ATOM records):
    >4ol8A (A:)
pvwlqqkyreiirndlpppvkhdieikpgarlprlqpyhvtekneqeinkivqklldnkf
ivpskspcsspvvlvpktfrlcvdyrtlnkatisdpfplpridnllsrignaqifttldl
hsgyhqipmepkdryktafvtpsgkyeytvmpfglvnapstfarymadtfrdlrfvnvyl
ddilifsespeehwkhldtvlerlknenlivkkkkckfeeteflgysigiqkiaplqhkc
aairdfptpktvkqaqrflgminyyrrfipncskiaqpitekqdkaidklkdapfnnkan
yrlttdaskdgigavleevdnknklvgvvgyfsksleypagelellgiikalhhfrymlh
gkhftlrtnharrvqrwlddlatydftley

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4ol8B (B:)
gptiqsvepnatdhsnkdtfctlpvwlqqkyreiirndlpprpadinnipvkhdieikpg
arlprlqpyhvtekneqeinkivqklldnkfivpskspcsspvvlvpkkdgtfrlcvdyr
tlnkatisdpfplpridnllsrignaqifttldlhsgyhqipmepkdryktafvtpsgky
eytvmpfglvnapstfarymadtfrdlrfvnvylddilifsespeehwkhldtvlerlkn
enlivkkkkckfaseeteflgysigiqkiaplqhkcaairdfptpktvkqaqrflgminy
yrrfipncskiaqpiqlficdksqwtekqdkaidklkdalcnspvlvpfnnkanyrlttd
askdgigavleevdnknklvgvvgyfskslesaqknypagelellgiikalhhfrymlhg
khftlrtnhisllslqnkneparrvqrwlddlatydftleylagpknvvadaisravy

    Sequence, based on observed residues (ATOM records):
    >4ol8B (B:)
kdtfctlpvwlqqkyreiirndlpprpapvkhdieikpgarlprlqpyhvtekneqeink
ivqklldnkfivpskspcsspvvlvpkkdgtfrlcvdyrtlnkatisdpfplpridnlls
rignaqifttldlhsgyhqipmepkdryktafvtpsgkyeytvmpfglvnapstfaryma
dtfrdlrfvnvylddilifsespeehwkhldtvlerlknenlivkkkkckfaseeteflg
ysigiqkiaplqhkcaairdfptpktvkqaqrflgminyyrrfipncskiaqpiqlficd
ksqwtekqdkaidklkdalcnspvlvpfnnkanyrlttdaskdgigavleevdnknklvg
vvgyfsksleypagelellgiikalhhfrymlhgkhftlrtnhisllslqnkneparrvq
rwlddlatydftleylagpknvvadaisravy

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    Sequence, based on SEQRES records:
    >4ol8E (E:)
gptiqsvepnatdhsnkdtfctlpvwlqqkyreiirndlpprpadinnipvkhdieikpg
arlprlqpyhvtekneqeinkivqklldnkfivpskspcsspvvlvpkkdgtfrlcvdyr
tlnkatisdpfplpridnllsrignaqifttldlhsgyhqipmepkdryktafvtpsgky
eytvmpfglvnapstfarymadtfrdlrfvnvylddilifsespeehwkhldtvlerlkn
enlivkkkkckfaseeteflgysigiqkiaplqhkcaairdfptpktvkqaqrflgminy
yrrfipncskiaqpiqlficdksqwtekqdkaidklkdalcnspvlvpfnnkanyrlttd
askdgigavleevdnknklvgvvgyfskslesaqknypagelellgiikalhhfrymlhg
khftlrtnhisllslqnkneparrvqrwlddlatydftleylagpknvvadaisravy

    Sequence, based on observed residues (ATOM records):
    >4ol8E (E:)
pvwlqqkyreiirndlpprpvkhdieikpgarlprlqpyhvtekneqeinkivqklldnk
fivpskspcsspvvlvpgtfrlcvdyrtlnkatisdpfplpridnllsrignaqifttld
lhsgyhqipmepkdryktafvtpsgkyeytvmpfglvnapstfarymadtfrdlrfvnvy
lddilifsespeehwkhldtvlerlknenlivkkkkckfaseeteflgysigiqkiaphk
caairdfptpktvkqaqrflgminyyrrfipncskiaqpitekqdkaidklkspvlvpfn
yrlttdaskdgigavlevgyfskslesaqgelellgiikalhhfrymlhgkhftlrtnhi
eparrvqrwlddlatydftle

  • Chain 'F':
    Sequence, based on SEQRES records:
    >4ol8F (F:)
gptiqsvepnatdhsnkdtfctlpvwlqqkyreiirndlpprpadinnipvkhdieikpg
arlprlqpyhvtekneqeinkivqklldnkfivpskspcsspvvlvpkkdgtfrlcvdyr
tlnkatisdpfplpridnllsrignaqifttldlhsgyhqipmepkdryktafvtpsgky
eytvmpfglvnapstfarymadtfrdlrfvnvylddilifsespeehwkhldtvlerlkn
enlivkkkkckfaseeteflgysigiqkiaplqhkcaairdfptpktvkqaqrflgminy
yrrfipncskiaqpiqlficdksqwtekqdkaidklkdalcnspvlvpfnnkanyrlttd
askdgigavleevdnknklvgvvgyfskslesaqknypagelellgiikalhhfrymlhg
khftlrtnhisllslqnkneparrvqrwlddlatydftleylagpknvvadaisravy

    Sequence, based on observed residues (ATOM records):
    >4ol8F (F:)
kdtfctlpvwlqqkyreiirndlpprpapvkhdieikpgarlprlqpyhvtekneqeink
ivqklldnkfivpskspcsspvvlvpkkdgtfrlcvdyrtlnkatisdpfplpridnlls
rignaqifttldlhsgyhqipmepkdryktafvtpsgkyeytvmpfglvnapstfaryma
dtfrdlrfvnvylddilifsespeehwkhldtvlerlknenlivkkkkckfaseeteflg
ysigiqkiaplqhkcaairdfptkqaqrflgminyyrrfipncskiaqptekqdkaidkl
kdalcnspvlvpfnnkanyrlttdaskdgigavleevdnknklvgvvgyfsksypagele
llgiikalhhfrymlhgkhftlrtnhisllslqnkneparrvqrwlddlatydftleylv
vadaisr

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.