PDB entry 4ojd

View 4ojd on RCSB PDB site
Description: crystal structure of a c-terminally truncated trimeric ectodomain of the c. elegans fusion protein eff-1 g260a/d321e/d322e mutant
Deposited on 2014-01-21, released 2014-05-14
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.26 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'H':
    Compound: eff-1a
    Species: Caenorhabditis elegans [TaxId:6239]
    Gene: C26D10.5, CELE_C26D10.5, eff-1
    Database cross-references and differences (RAF-indexed):
    • Uniprot G5ECA1 (Start-488)
      • engineered mutation (239)
      • engineered mutation (300-301)
      • expression tag (489)
  • Heterogens: NAG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'H':
    Sequence, based on SEQRES records:
    >4ojdH (H:)
    rsfpleekfdglfraepphcsktpivraqtsqnamssiargmqmqfsiglhtavcfrlye
    dtqlasqeinddenagnqtsllhtirleklehhhpitqrytfgipevhascicecdatss
    tctaeshqftacpesdksdetsscyrtffpnqtpigcseddipklccdvrfkpyknmtfl
    avkleqpttyatfvyaaydfvngywvekdktkirsqldggtqdrhldqkrrislavtaga
    rashqletgmyfsrtsnggeteelrmqplneitdnnfdrlgwyrmddsghfhvnngvvkm
    eeihkakvknckeqtyksilsanhympghfnltrplevikpwiqsarifdsslrqavvth
    aegtnlqisihlddevesqnlvffhnasrirdfsgsiivdsksnrlfnltvyeasgkidg
    svkmstgfgsdtihtftayvsdlhasnrsmiiplpaivgqgaraiclradsmadidkich
    vieyfesplfeddddkagwshpqfekgggsgggsgggswshpqfek
    

    Sequence, based on observed residues (ATOM records):
    >4ojdH (H:)
    raepphcsktpivraqtsqnamgmqmqfsiglhtavcfrlysllhtirleklehhhpitq
    rytfgipevhascicecdatsstctaeshqftacpedetsscyrtffpnqtpigcseddi
    pklccdvrfkpyknmtflavkleqpttyatfvyaaydfvngywvekdktkirsqldggtq
    drhldqkrrislavtagarashqletgmyfsrtsnggeteelrmqplneitdnnfdrlgw
    yrmddsghfhvnngvvkmeeihkakvknckeqtyksilsanhympghfnltrplevikpw
    iqsarifdsslrqavvthaegtnlqisihlesqnlvffhnasrirdfsgsiivdsksnrl
    fnltvyeasgkidgsvkmstgfgsdtihtftayvsdlhasnrsmiiplpaivgqgaraic
    lradsmadidkichvieyfesplf