PDB entry 4oit

View 4oit on RCSB PDB site
Description: Structure, interactions and evolutionary implications of a domain-swapped lectin dimer from Mycobacterium smegmatis
Class: sugar binding protein
Keywords: Beta-prism II fold, bacterial lectin, protein-carbohydrate interactions, Beta-Prism II, Carbohydrate binding, Carbohydrate/Sugar, SUGAR BINDING PROTEIN
Deposited on 2014-01-20, released 2014-07-23
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.24 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: LysM domain protein
    Species: MYCOBACTERIUM SMEGMATIS [TaxId:246196]
    Gene: MSMEG_3662
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0QYH7 (Start-104)
      • expression tag (105-106)
    Domains in SCOPe 2.08: d4oita1, d4oita2
  • Chain 'B':
    Compound: LysM domain protein
    Species: MYCOBACTERIUM SMEGMATIS [TaxId:246196]
    Gene: MSMEG_3662
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0QYH7 (Start-104)
      • expression tag (105-107)
    Domains in SCOPe 2.08: d4oitb1, d4oitb2
  • Chain 'C':
    Compound: LysM domain protein
    Species: MYCOBACTERIUM SMEGMATIS [TaxId:246196]
    Gene: MSMEG_3662
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0QYH7 (Start-104)
      • expression tag (105-106)
    Domains in SCOPe 2.08: d4oitc1, d4oitc2
  • Chain 'D':
    Compound: LysM domain protein
    Species: MYCOBACTERIUM SMEGMATIS [TaxId:246196]
    Gene: MSMEG_3662
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0QYH7 (Start-104)
      • expression tag (105-106)
    Domains in SCOPe 2.08: d4oitd1, d4oitd2
  • Heterogens: MAN, BMA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4oitA (A:)
mgdtltagqklerggslqsgngaytltlqddgnlvlyardkavwstgtngqdvvraevqt
dgnfvlytaekpvwhtdtkgkkevklvlqddrnlvlyakdgpawslehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4oitA (A:)
gdtltagqklerggslqsgngaytltlqddgnlvlyardkavwstgtngqdvvraevqtd
gnfvlytaekpvwhtdtkgkkevklvlqddrnlvlyakdgpawsle

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4oitB (B:)
mgdtltagqklerggslqsgngaytltlqddgnlvlyardkavwstgtngqdvvraevqt
dgnfvlytaekpvwhtdtkgkkevklvlqddrnlvlyakdgpawslehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4oitB (B:)
gdtltagqklerggslqsgngaytltlqddgnlvlyardkavwstgtngqdvvraevqtd
gnfvlytaekpvwhtdtkgkkevklvlqddrnlvlyakdgpawsleh

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4oitC (C:)
mgdtltagqklerggslqsgngaytltlqddgnlvlyardkavwstgtngqdvvraevqt
dgnfvlytaekpvwhtdtkgkkevklvlqddrnlvlyakdgpawslehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4oitC (C:)
gdtltagqklerggslqsgngaytltlqddgnlvlyardkavwstgtngqdvvraevqtd
gnfvlytaekpvwhtdtkgkkevklvlqddrnlvlyakdgpawsle

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4oitD (D:)
mgdtltagqklerggslqsgngaytltlqddgnlvlyardkavwstgtngqdvvraevqt
dgnfvlytaekpvwhtdtkgkkevklvlqddrnlvlyakdgpawslehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4oitD (D:)
gdtltagqklerggslqsgngaytltlqddgnlvlyardkavwstgtngqdvvraevqtd
gnfvlytaekpvwhtdtkgkkevklvlqddrnlvlyakdgpawsle