PDB entry 4oi7

View 4oi7 on RCSB PDB site
Description: RAGE recognizes nucleic acids and promotes inflammatory responses to DNA
Deposited on 2014-01-19, released 2014-04-30
The last revision was dated 2014-04-30, with a file datestamp of 2014-04-25.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: 0.217
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Advanced glycosylation end product-specific receptor
    Species: Homo sapiens [TaxId:9606]
    Gene: AGER, RAGE
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Advanced glycosylation end product-specific receptor
    Species: Homo sapiens [TaxId:9606]
    Gene: AGER, RAGE
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q15109 (4-End)
      • expression tag (2-3)
  • Chain 'E':
    Compound: 5'-d(*cp*tp*gp*cp*ap*ap*cp*gp*ap*tp*gp*cp*tp*ap*cp*gp*ap*ap*cp*gp*tp*g)-3'
  • Chain 'F':
    Compound: 5'-d(*cp*ap*cp*gp*tp*tp*cp*gp*tp*ap*gp*cp*ap*tp*cp*gp*tp*tp*gp*cp*ap*g)-3'
  • Heterogens: EDO, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4oi7A (A:)
gsvdaqnitarigeplvlkckgapkkppqrlewklntgrteawkvlspqgggpwdsvarv
lpngslflpavgiqdegifrcqamnrngketksnyrvrvyqipgkpeivdsaseltagvp
nkvgtcvsegsypagtlswhldgkplvpnekgvsvkeqtrrhpetglftlqselmvtpar
ggdprptfscsfspglprhralrtapiqprvwepvpleeaaas

    Sequence, based on observed residues (ATOM records):
    >4oi7A (A:)
aqnitarigeplvlkckgapkkppqrlewklntgrteawkvlspqgggpwdsvarvlpng
slflpavgiqdegifrcqamnrngketksnyrvrvyqipgkpeivdsaseltagvpnkvg
tcvsegsypagtlswhldgkplvpnekgvsvkeqtrrhpetglftlqselmvtparggdp
rptfscsfspglprhralrtapiqprvwepv

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4oi7B (B:)
gsvdaqnitarigeplvlkckgapkkppqrlewklntgrteawkvlspqgggpwdsvarv
lpngslflpavgiqdegifrcqamnrngketksnyrvrvyqipgkpeivdsaseltagvp
nkvgtcvsegsypagtlswhldgkplvpnekgvsvkeqtrrhpetglftlqselmvtpar
ggdprptfscsfspglprhralrtapiqprvwepvpleeaaas

    Sequence, based on observed residues (ATOM records):
    >4oi7B (B:)
vdaqnitarigeplvlkckgapkkppqrlewklntgrteawkvlspqgggpwdsvarvlp
ngslflpavgiqdegifrcqamnrngketksnyrvrvyqipgkpeivdsaseltagvpnk
vgtcvsegsypagtlswhldgkplvpnekgvsvkeqtrrhpetglftlqselmvtpargg
dprptfscsfspglprhralrtapiqprvwepvpl

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.