PDB entry 4oi4

View 4oi4 on RCSB PDB site
Description: Protein complex of Clp1 bound to ATP and Mg2+ with Pcf11deltaN454deltaC563 of S. cerevisiae
Deposited on 2014-01-18, released 2014-05-14
The last revision was dated 2015-01-14, with a file datestamp of 2015-01-09.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.189
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: mRNA cleavage and polyadenylation factor clp1
    Species: Saccharomyces cerevisiae [TaxId:559292]
    Gene: CLP1, YOR250C
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Protein PCF11
    Species: Saccharomyces cerevisiae [TaxId:559292]
    Gene: PCF11, YDR228C, YD9934.13C
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: mRNA cleavage and polyadenylation factor clp1
    Species: Saccharomyces cerevisiae [TaxId:559292]
    Gene: CLP1, YOR250C
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Protein PCF11
    Species: Saccharomyces cerevisiae [TaxId:559292]
    Gene: PCF11, YDR228C, YD9934.13C
    Database cross-references and differences (RAF-indexed):
  • Chain 'U':
    Compound: Protein PCF11
    Species: Saccharomyces cerevisiae [TaxId:559292]
    Gene: PCF11, YDR228C, YD9934.13C
    Database cross-references and differences (RAF-indexed):
    • Uniprot P39081 (5-End)
      • expression tag (2-4)
  • Heterogens: ATP, MG, GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4oi4A (A:)
mahhhhhhmaslpgidehttseelitgdnewhklvipkgsdwqidlkaegklivkvnsgi
veifgtelavddeytfqnwkfpiyaveetellwkcpdlttntitvkpnhtmkyiynlhfm
lekirmsnfegprvvivggsqtgktslsrtlcsyalkfnayqplyinldpqqpiftvpgc
isatpisdildaqlptwgqsltsgatllhnkqpmvknfglerinenkdlylecisqlgqv
vgqrlhldpqvrrsgcivdtpsisqldenlaelhhiieklnvnimlvlcsetdplwekvk
ktfgpelgnnniffipkldgvsavddvykrslqrtsireyfygsldtalspyaigvdyed
ltiwkpsnvfdnevgrvelfpvtitpsnlqhaiiaitfaerradqatvikspilgfalit
evnekrrklrvllpvpgrlpskamiltsyryle

    Sequence, based on observed residues (ATOM records):
    >4oi4A (A:)
tgdnewhklvipkgsdwqidlkaegklivkvnsgiveifgtelavddeytfqnwkfpiya
veetellwkcpdlttntitvkpnhtmkyiynlhfmlekirmsnfegprvvivggsqtgkt
slsrtlcsyalkfnayqplyinldpqqpiftvpgcisatpisdildaqlptwgqsltsga
tllhnkqpmvknfglerinenkdlylecisqlgqvvgqrlhldpqvrrsgcivdtpsisq
ldenlaelhhiieklnvnimlvlcsetdplwekvkktfgpelgnnniffipkldgvsavd
dvykrslqrtsireyfygsldtalspyaigvdyedltiwkpsnvfdnevgrvelfpvtit
psnlqhaiiaitfaerradqatvikspilgfalitevnekrrklrvllpvpgrlpskami
ltsyryle

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4oi4B (B:)
gspefgsqntantgisnsnlnttttrkniqsrnwylsdsqwaafkddeitstkhkndytd
phanknidksalnihadendegsvdntlgsdrsneleirgkyvvvpetsqdmafk

    Sequence, based on observed residues (ATOM records):
    >4oi4B (B:)
kniqsrnwylsdsqwaafkddeits

  • Chain 'C':
    Sequence, based on SEQRES records:
    >4oi4C (C:)
mahhhhhhmaslpgidehttseelitgdnewhklvipkgsdwqidlkaegklivkvnsgi
veifgtelavddeytfqnwkfpiyaveetellwkcpdlttntitvkpnhtmkyiynlhfm
lekirmsnfegprvvivggsqtgktslsrtlcsyalkfnayqplyinldpqqpiftvpgc
isatpisdildaqlptwgqsltsgatllhnkqpmvknfglerinenkdlylecisqlgqv
vgqrlhldpqvrrsgcivdtpsisqldenlaelhhiieklnvnimlvlcsetdplwekvk
ktfgpelgnnniffipkldgvsavddvykrslqrtsireyfygsldtalspyaigvdyed
ltiwkpsnvfdnevgrvelfpvtitpsnlqhaiiaitfaerradqatvikspilgfalit
evnekrrklrvllpvpgrlpskamiltsyryle

    Sequence, based on observed residues (ATOM records):
    >4oi4C (C:)
gdnewhklvipkgsdwqidlkaegklivkvnsgiveifgtelavddeytfqnwkfpiyav
eetellwkcpdlttntitvkpnhtmkyiynlhfmlekirmsnfegprvvivggsqtgkts
lsrtlcsyalkfnayqplyinldpqqpiftvpgcisatpisdildaqlptwgqsltsgat
llhnkqpmvknfglerinenkdlylecisqlgqvvgqrlhldpqvrrsgcivdtpsisql
denlaelhhiieklnvnimlvlcsetdplwekvkktfgpelgnnniffipkldgvsavdd
vykrslqrtsireyfygsldtalspyaigvdyedltiwkpsnvfdnevgrvelfpvtitp
snlqhaiiaitfaerradqatvikspilgfalitevnekrrklrvllpvpgrlpskamil
tsyryle

  • Chain 'D':
    Sequence, based on SEQRES records:
    >4oi4D (D:)
gspefgsqntantgisnsnlnttttrkniqsrnwylsdsqwaafkddeitstkhkndytd
phanknidksalnihadendegsvdntlgsdrsneleirgkyvvvpetsqdmafk

    Sequence, based on observed residues (ATOM records):
    >4oi4D (D:)
niqsrnwylsdsqwaafkddeits

  • Chain 'U':
    Sequence, based on SEQRES records:
    >4oi4U (U:)
gspefgsqntantgisnsnlnttttrkniqsrnwylsdsqwaafkddeitstkhkndytd
phanknidksalnihadendegsvdntlgsdrsneleirgkyvvvpetsqdmafk

    Sequence, based on observed residues (ATOM records):
    >4oi4U (U:)
pefgsqnt