PDB entry 4ofw

View 4ofw on RCSB PDB site
Description: Crystal Structure of Arabidopsis thaliana DJ-1d
Class: lyase
Keywords: Glyoxalase, LYASE
Deposited on 2014-01-15, released 2014-10-15
The last revision prior to the SCOPe 2.06 freeze date was dated 2014-12-24, with a file datestamp of 2014-12-19.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.243
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Protein DJ-1 homolog D
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: DJ1D, At3g02720, F13E7.34
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9M8R4 (0-385)
      • conflict (235)
      • expression tag (386)
    Domains in SCOPe 2.06: d4ofwa1, d4ofwa2, d4ofwa3
  • Chain 'B':
    Compound: Protein DJ-1 homolog D
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: DJ1D, At3g02720, F13E7.34
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9M8R4 (0-385)
      • conflict (235)
      • expression tag (386)
    Domains in SCOPe 2.06: d4ofwb1, d4ofwb2, d4ofwb3
  • Chain 'C':
    Compound: Protein DJ-1 homolog D
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: DJ1D, At3g02720, F13E7.34
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9M8R4 (0-385)
      • conflict (235)
      • expression tag (386)
    Domains in SCOPe 2.06: d4ofwc1, d4ofwc2, d4ofwc3
  • Chain 'D':
    Compound: Protein DJ-1 homolog D
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: DJ1D, At3g02720, F13E7.34
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9M8R4 (0-385)
      • conflict (235)
      • expression tag (386)
    Domains in SCOPe 2.06: d4ofwd1, d4ofwd2, d4ofwd3
  • Chain 'E':
    Compound: Protein DJ-1 homolog D
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: DJ1D, At3g02720, F13E7.34
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9M8R4 (0-385)
      • conflict (235)
      • expression tag (386)
    Domains in SCOPe 2.06: d4ofwe1, d4ofwe2, d4ofwe3
  • Chain 'F':
    Compound: Protein DJ-1 homolog D
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: DJ1D, At3g02720, F13E7.34
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9M8R4 (0-385)
      • conflict (235)
      • expression tag (386)
    Domains in SCOPe 2.06: d4ofwf1, d4ofwf2, d4ofwf3
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4ofwA (A:)
nsrtvlilcgdymedyevmvpfqalqafgitvhtvcpgkkagdscptavhdfcghqtyfe
srghnftlnatfdevdlskydglvipggrapeylaltasvvelvkefsrsgkpiasichg
qlilaaadtvngrkctayatvgpslvaagakwvepitpdvcvvdgslitaatyeghpefi
qlfvkalggkitgankrilflcgdymedyevkvpfqslqalgcqvdavcpekkagercpt
aihdfegdqtysekpghtfalttnfddlvsssydalvipggrapeylalnehvlnivkef
mnsekpvasichgqqilaaagvlkgrkctaypavklnvvlgggtwlepdpidrcftdgnl
vtgaawpghpefvsqlmallgiqvsfh

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4ofwB (B:)
nsrtvlilcgdymedyevmvpfqalqafgitvhtvcpgkkagdscptavhdfcghqtyfe
srghnftlnatfdevdlskydglvipggrapeylaltasvvelvkefsrsgkpiasichg
qlilaaadtvngrkctayatvgpslvaagakwvepitpdvcvvdgslitaatyeghpefi
qlfvkalggkitgankrilflcgdymedyevkvpfqslqalgcqvdavcpekkagercpt
aihdfegdqtysekpghtfalttnfddlvsssydalvipggrapeylalnehvlnivkef
mnsekpvasichgqqilaaagvlkgrkctaypavklnvvlgggtwlepdpidrcftdgnl
vtgaawpghpefvsqlmallgiqvsfh

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4ofwC (C:)
nsrtvlilcgdymedyevmvpfqalqafgitvhtvcpgkkagdscptavhdfcghqtyfe
srghnftlnatfdevdlskydglvipggrapeylaltasvvelvkefsrsgkpiasichg
qlilaaadtvngrkctayatvgpslvaagakwvepitpdvcvvdgslitaatyeghpefi
qlfvkalggkitgankrilflcgdymedyevkvpfqslqalgcqvdavcpekkagercpt
aihdfegdqtysekpghtfalttnfddlvsssydalvipggrapeylalnehvlnivkef
mnsekpvasichgqqilaaagvlkgrkctaypavklnvvlgggtwlepdpidrcftdgnl
vtgaawpghpefvsqlmallgiqvsfh

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4ofwD (D:)
nsrtvlilcgdymedyevmvpfqalqafgitvhtvcpgkkagdscptavhdfcghqtyfe
srghnftlnatfdevdlskydglvipggrapeylaltasvvelvkefsrsgkpiasichg
qlilaaadtvngrkctayatvgpslvaagakwvepitpdvcvvdgslitaatyeghpefi
qlfvkalggkitgankrilflcgdymedyevkvpfqslqalgcqvdavcpekkagercpt
aihdfegdqtysekpghtfalttnfddlvsssydalvipggrapeylalnehvlnivkef
mnsekpvasichgqqilaaagvlkgrkctaypavklnvvlgggtwlepdpidrcftdgnl
vtgaawpghpefvsqlmallgiqvsfh

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4ofwE (E:)
nsrtvlilcgdymedyevmvpfqalqafgitvhtvcpgkkagdscptavhdfcghqtyfe
srghnftlnatfdevdlskydglvipggrapeylaltasvvelvkefsrsgkpiasichg
qlilaaadtvngrkctayatvgpslvaagakwvepitpdvcvvdgslitaatyeghpefi
qlfvkalggkitgankrilflcgdymedyevkvpfqslqalgcqvdavcpekkagercpt
aihdfegdqtysekpghtfalttnfddlvsssydalvipggrapeylalnehvlnivkef
mnsekpvasichgqqilaaagvlkgrkctaypavklnvvlgggtwlepdpidrcftdgnl
vtgaawpghpefvsqlmallgiqvsfh

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4ofwF (F:)
nsrtvlilcgdymedyevmvpfqalqafgitvhtvcpgkkagdscptavhdfcghqtyfe
srghnftlnatfdevdlskydglvipggrapeylaltasvvelvkefsrsgkpiasichg
qlilaaadtvngrkctayatvgpslvaagakwvepitpdvcvvdgslitaatyeghpefi
qlfvkalggkitgankrilflcgdymedyevkvpfqslqalgcqvdavcpekkagercpt
aihdfegdqtysekpghtfalttnfddlvsssydalvipggrapeylalnehvlnivkef
mnsekpvasichgqqilaaagvlkgrkctaypavklnvvlgggtwlepdpidrcftdgnl
vtgaawpghpefvsqlmallgiqvsfh