PDB entry 4ods

View 4ods on RCSB PDB site
Description: Unliganded Fab structure of lipid A-specific antibody S55-3
Class: immune system
Keywords: Carbohydrate binding, IMMUNE SYSTEM
Deposited on 2014-01-10, released 2015-07-01
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-03-07, with a file datestamp of 2018-03-02.
Experiment type: XRAY
Resolution: 1.94 Å
R-factor: N/A
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'H':
    Compound: S55-3 Fab (IgG2b) heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 4ODS (0-221)
    Domains in SCOPe 2.08: d4odsh_
  • Chain 'L':
    Compound: S55-3 Fab (IgG2b) heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 4ODS (0-217)
    Domains in SCOPe 2.08: d4odsl1, d4odsl2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >4odsH (H:)
evqlvesggdlvkpggslklscagsgitfsgygmswvrqtpdkslewvalisnggsyayy
sdsvkgrftisrdnakntlylqmsslrsddtaiyycarhkglrggtnamdywgqgtsvtv
ssakttppsvyplapgcgdttgssvtlgclvkgyfpesvtvtwnsgslsssvhtfpallq
sglytmsssvtvpsstwpsetvtcsvahpassttvdkkleps

    Sequence, based on observed residues (ATOM records): (download) 
    >4odsH (H:)
evqlvesggdlvkpggslklscagsgitfsgygmswvrqtpdkslewvalisnggsyayy
sdsvkgrftisrdnakntlylqmsslrsddtaiyycarhkglrggtnamdywgqgtsvtv
ssakttppsvyplapgcgdttgssvtlgclvkgyfpesvtvtwnsgssvhtfpallqsgl
ytmsssvtvpsstwpsetvtcsvahpassttvdkkleps

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4odsL (L:)
divltqspaslavslgqratifcrasetvdsygnsfmhwyqqkpgqppklliyrasnles
giparfsgsgsrtdftltinpveaddvatyycqqsnedprtfgggtkleikradaaptvs
ifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqnskdstysms
stltltkdeyerhnsytceathktstspivksfnrnec