PDB entry 4odb

View 4odb on RCSB PDB site
Description: crystal structure of the t1l reovirus attachment protein sigma1 in complex with junctional adhesion molecule-a
Deposited on 2014-01-10, released 2015-04-01
The last revision was dated 2017-11-22, with a file datestamp of 2017-11-17.
Experiment type: XRAY
Resolution: 3.2 Å
R-factor: N/A
AEROSPACI score: 0.1 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Outer capsid protein sigma-1
    Species: Mammalian orthoreovirus 1 [TaxId:10884]
    Gene: S1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Outer capsid protein sigma-1
    Species: Mammalian orthoreovirus 1 [TaxId:10884]
    Gene: S1
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Outer capsid protein sigma-1
    Species: Mammalian orthoreovirus 1 [TaxId:10884]
    Gene: S1
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Junctional adhesion molecule A
    Species: Homo sapiens [TaxId:9606]
    Gene: F11R, JAM1, JCAM, UNQ264/PRO301
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Junctional adhesion molecule A
    Species: Homo sapiens [TaxId:9606]
    Gene: F11R, JAM1, JCAM, UNQ264/PRO301
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Junctional adhesion molecule A
    Species: Homo sapiens [TaxId:9606]
    Gene: F11R, JAM1, JCAM, UNQ264/PRO301
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4odbA (A:)
melptyrypleldtannrvqvadrfgmrtgtwtgqlqyqhpqlswranvtlnlmkvddwl
vlsfsqmttnsimadgkfvinfvsglssgwqtgdtepsstidplsttfaavqflnngqri
dafrimgvsewtdgeleiknyggtytghtqvywapwtimypcnvr

    Sequence, based on observed residues (ATOM records):
    >4odbA (A:)
lptyrypleldtannrvqvadrfgmrtgtwtgqlqyqhpqlswranvtlnlmkvddwlvl
sfsqmttnsimadgkfvinfvsglssgwqtgdtepsstidplsttfaavqflnngqrida
frimgvsewtdgeleiknyggtytghtqvywapwtimypcnv

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4odbB (B:)
melptyrypleldtannrvqvadrfgmrtgtwtgqlqyqhpqlswranvtlnlmkvddwl
vlsfsqmttnsimadgkfvinfvsglssgwqtgdtepsstidplsttfaavqflnngqri
dafrimgvsewtdgeleiknyggtytghtqvywapwtimypcnvr

    Sequence, based on observed residues (ATOM records):
    >4odbB (B:)
lptyrypleldtannrvqvadrfgmrtgtwtgqlqyqhpqlswranvtlnlmkvddwlvl
sfsqmttnsimadgkfvinfvsglssgwqtgdtepsstidplsttfaavqflnngqrida
frimgvsewtdgeleiknyggtytghtqvywapwtimypcnv

  • Chain 'C':
    Sequence, based on SEQRES records:
    >4odbC (C:)
melptyrypleldtannrvqvadrfgmrtgtwtgqlqyqhpqlswranvtlnlmkvddwl
vlsfsqmttnsimadgkfvinfvsglssgwqtgdtepsstidplsttfaavqflnngqri
dafrimgvsewtdgeleiknyggtytghtqvywapwtimypcnvr

    Sequence, based on observed residues (ATOM records):
    >4odbC (C:)
lptyrypleldtannrvqvadrfgmrtgtwtgqlqyqhpqlswranvtlnlmkvddwlvl
sfsqmttnsimadgkfvinfvsglssgwqtgdtepsstidplsttfaavqflnngqrida
frimgvsewtdgeleiknyggtytghtqvywapwtimypcnv

  • Chain 'D':
    Sequence, based on SEQRES records:
    >4odbD (D:)
gssvtvhssepevripennpvklscaysgfssprvewkfdqgdttrlvcynnkitasyed
rvtflptgitfksvtredtgtytcmvseeggnsygevkvklivl

    Sequence, based on observed residues (ATOM records):
    >4odbD (D:)
svtvhssepevripennpvklscaysgfssprvewkfdqgdttrlvcynnkitasyedrv
tflptgitfksvtredtgtytcmvseeggnsygevkvklivl

  • Chain 'E':
    Sequence, based on SEQRES records:
    >4odbE (E:)
gssvtvhssepevripennpvklscaysgfssprvewkfdqgdttrlvcynnkitasyed
rvtflptgitfksvtredtgtytcmvseeggnsygevkvklivl

    Sequence, based on observed residues (ATOM records):
    >4odbE (E:)
svtvhssepevripennpvklscaysgfssprvewkfdqgdttrlvcynnkitasyedrv
tflptgitfksvtredtgtytcmvseeggnsygevkvklivl

  • Chain 'F':
    Sequence, based on SEQRES records:
    >4odbF (F:)
gssvtvhssepevripennpvklscaysgfssprvewkfdqgdttrlvcynnkitasyed
rvtflptgitfksvtredtgtytcmvseeggnsygevkvklivl

    Sequence, based on observed residues (ATOM records):
    >4odbF (F:)
svtvhssepevripennpvklscaysgfssprvewkfdqgdttrlvcynnkitasyedrv
tflptgitfksvtredtgtytcmvseeggnsygevkvklivl