PDB entry 4ocn

View 4ocn on RCSB PDB site
Description: Crystal Structure of the Rpn8-Rpn11 MPN domain heterodimer, crystal form II
Class: hydrolase, protein binding
Keywords: 26S proteasome, isopeptidase activity, regulatory particle, lid, ubiquitin, HYDROLASE, PROTEIN BINDING
Deposited on 2014-01-09, released 2014-01-29
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-11-22, with a file datestamp of 2017-11-17.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 26s proteasome regulatory subunit rpn8
    Species: Saccharomyces cerevisiae [TaxId:559292]
    Gene: O5360, RPN8, YOR261C
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4ocna_
  • Chain 'B':
    Compound: 26s proteasome regulatory subunit rpn11
    Species: Saccharomyces cerevisiae [TaxId:559292]
    Gene: MPR1, RPN11, YFR004W
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4ocnb_
  • Chain 'C':
    Compound: Nb1
    Species: LAMA GLAMA [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 4OCN
    Domains in SCOPe 2.07: d4ocnc_
  • Chain 'D':
    Compound: 26s proteasome regulatory subunit rpn8
    Species: Saccharomyces cerevisiae [TaxId:559292]
    Gene: O5360, RPN8, YOR261C
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4ocnd_
  • Chain 'E':
    Compound: 26s proteasome regulatory subunit rpn11
    Species: Saccharomyces cerevisiae [TaxId:559292]
    Gene: MPR1, RPN11, YFR004W
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4ocne_
  • Chain 'F':
    Compound: Nb1
    Species: LAMA GLAMA [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 4OCN
    Domains in SCOPe 2.07: d4ocnf_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4ocnA (A:)
ghmslqhekvtiaplvllsaldhyertqtkenkrcvgvilgdansstirvtnsfalpfee
deknsdvwfldhnyienmnemckkinakekligwyhsgpklrasdlkinelfkkytqnnp
lllivdvkqqgvglptdayvaieqvkddgtstektflhlpctieaeeaeeigvehllrgs
ggsggsg

    Sequence, based on observed residues (ATOM records): (download) 
    >4ocnA (A:)
lqhekvtiaplvllsaldhyertqtkenkrcvgvilgdansstirvtnsfalpfeedekn
sdvwfldhnyienmnemckkinakekligwyhsgpklrasdlkinelfkkytqnnpllli
vdvkqqgvglptdayvaieqvkddgtstektflhlpctieaeeaeeigvehllr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4ocnB (B:)
merlqrlmmnskvgsadtgrddtketvyissiallkmlkhgragvpmevmglmlgefvdd
ytvnvvdvfampqsgtgvsveavddvfqakmmdmlkqtgrdqmvvgwyhshpgfgcwlss
vdvntqksfeqlnsravavvvdpiqsvkgkvvidafrlidtgalinnleprqttsntgll
nkaniqalihglnrhyyslnidyhktaketkmlmnlhkeq

    Sequence, based on observed residues (ATOM records): (download) 
    >4ocnB (B:)
tketvyissiallkmlkhgragvpmevmglmlgefvddytvnvvdvfampqsgvddvfqa
kmmdmlkqtgrdqmvvgwyhshpgfgcwlssvdvntqksfeqlnsravavvvdpiqsvkg
kvvidafrlidtgalinnllnrhyyslnidyhktaketkmlmnlh

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4ocnC (C:)
mqvqlqesggglvpaggslrlscvdsgrtfsstvmawfrqapgkerefvatirwsggnty
yadsvkgrftisrdnarntvylqmnslkpedtavyycaggtyygtlsykydfwgrgtqvt
vsshhhhhhepea

    Sequence, based on observed residues (ATOM records): (download) 
    >4ocnC (C:)
vqlqesggglvpaggslrlscvdsgrstvmawfrqapgkerefvatirwsggntyyadsv
kgrftisrdnarntvylqmnslkpedtavyycaggtyygtlsykydfwgrgtqvtvsshh
hh

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4ocnD (D:)
ghmslqhekvtiaplvllsaldhyertqtkenkrcvgvilgdansstirvtnsfalpfee
deknsdvwfldhnyienmnemckkinakekligwyhsgpklrasdlkinelfkkytqnnp
lllivdvkqqgvglptdayvaieqvkddgtstektflhlpctieaeeaeeigvehllrgs
ggsggsg

    Sequence, based on observed residues (ATOM records): (download) 
    >4ocnD (D:)
hekvtiaplvllsaldhyertqtkenkrcvgvilgdansstirvtnsfalpfeedeknsd
vwfldhnyienmnemckkinakekligwyhsgpklrasdlkinelfkkytqnnplllivd
vkqqgvglptdayvaieqvkddgtstektflhlpctieaeeaeeigvehllr

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4ocnE (E:)
merlqrlmmnskvgsadtgrddtketvyissiallkmlkhgragvpmevmglmlgefvdd
ytvnvvdvfampqsgtgvsveavddvfqakmmdmlkqtgrdqmvvgwyhshpgfgcwlss
vdvntqksfeqlnsravavvvdpiqsvkgkvvidafrlidtgalinnleprqttsntgll
nkaniqalihglnrhyyslnidyhktaketkmlmnlhkeq

    Sequence, based on observed residues (ATOM records): (download) 
    >4ocnE (E:)
dtketvyissiallkmlkhgragvpmevmglmlgefvddytvnvvdvfampqsgtveavd
dvfqakmmdmlkqtgrdqmvvgwyhshpgfgcwlssvdvntqksfeqlnsravavvvdpi
qsvkgkvvidafrlidlnrhyyslnidyhktaketkmlmnlh

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4ocnF (F:)
mqvqlqesggglvpaggslrlscvdsgrtfsstvmawfrqapgkerefvatirwsggnty
yadsvkgrftisrdnarntvylqmnslkpedtavyycaggtyygtlsykydfwgrgtqvt
vsshhhhhhepea

    Sequence, based on observed residues (ATOM records): (download) 
    >4ocnF (F:)
vqlqesggglvpaggslrlscvdsgrfsstvmawfrqapgkerefvatirwsggntyyad
svkgrftisrdnarntvylqmnslkpedtavyycaggtyygtlsykydfwgrgtqvtvss
hhh