PDB entry 4ocm
View 4ocm on RCSB PDB site
Description: Crystal Structure of the Rpn8-Rpn11 MPN domain heterodimer, crystal form Ib
Class: hydrolase, protein binding
Keywords: 26S proteasome, isopeptidase activity, regulatory particle, lid, ubiquitin, HYDROLASE, PROTEIN BINDING
Deposited on
2014-01-09, released
2014-01-29
The last revision prior to the SCOPe 2.04 freeze date was dated
2014-03-19, with a file datestamp of
2014-03-14.
Experiment type: XRAY
Resolution: 1.99 Å
R-factor: 0.218
AEROSPACI score: 0.34
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: 26s proteasome regulatory subunit rpn8
Species: Saccharomyces cerevisiae [TaxId:559292]
Gene: O5360, RPN8, YOR261C
Database cross-references and differences (RAF-indexed):
- Chain 'B':
Compound: 26s proteasome regulatory subunit rpn11
Species: Saccharomyces cerevisiae [TaxId:559292]
Gene: MPR1, RPN11, YFR004W
Database cross-references and differences (RAF-indexed):
- Chain 'C':
Compound: Nb1
Species: LAMA GLAMA [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d4ocmc_ - Chain 'D':
Compound: 26s proteasome regulatory subunit rpn8
Species: Saccharomyces cerevisiae [TaxId:559292]
Gene: O5360, RPN8, YOR261C
Database cross-references and differences (RAF-indexed):
- Chain 'E':
Compound: 26s proteasome regulatory subunit rpn11
Species: Saccharomyces cerevisiae [TaxId:559292]
Gene: MPR1, RPN11, YFR004W
Database cross-references and differences (RAF-indexed):
- Chain 'F':
Compound: Nb1
Species: LAMA GLAMA [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d4ocmf_ - Heterogens: ZN, K, HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
No sequence available.
- Chain 'C':
Sequence, based on SEQRES records: (download)
>4ocmC (C:)
mqvqlqesggglvpaggslrlscvdsgrtfsstvmawfrqapgkerefvatirwsggnty
yadsvkgrftisrdnarntvylqmnslkpedtavyycaggtyygtlsykydfwgrgtqvt
vsshhhhhhepea
Sequence, based on observed residues (ATOM records): (download)
>4ocmC (C:)
vqlqesggglvpaggslrlscvdsgrtfsstvmawfrqapgkerefvatirwsggntyya
dsvkgrftisrdnarntvylqmnslkpedtavyycaggtyygtlsykydfwgrgtqvtvs
shhhh
- Chain 'D':
No sequence available.
- Chain 'E':
No sequence available.
- Chain 'F':
Sequence, based on SEQRES records: (download)
>4ocmF (F:)
mqvqlqesggglvpaggslrlscvdsgrtfsstvmawfrqapgkerefvatirwsggnty
yadsvkgrftisrdnarntvylqmnslkpedtavyycaggtyygtlsykydfwgrgtqvt
vsshhhhhhepea
Sequence, based on observed residues (ATOM records): (download)
>4ocmF (F:)
vqlqesggglvpaggslrlscvdsgrtfsstvmawfrqapgkerefvatirwsggntyya
dsvkgrftisrdnarntvylqmnslkpedtavyycaggtyygtlsykydfwgrgtqvtvs
shhhh