PDB entry 4obw

View 4obw on RCSB PDB site
Description: crystal structure of yeast Coq5 in the SAM bound form
Deposited on 2014-01-07, released 2014-08-06
The last revision was dated 2014-09-10, with a file datestamp of 2014-09-05.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.236
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial
    Species: Saccharomyces cerevisiae [TaxId:559292]
    Gene: COQ5, DBI56, YML110C, YM8339.09C
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial
    Species: Saccharomyces cerevisiae [TaxId:559292]
    Gene: COQ5, DBI56, YML110C, YM8339.09C
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial
    Species: Saccharomyces cerevisiae [TaxId:559292]
    Gene: COQ5, DBI56, YML110C, YM8339.09C
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial
    Species: Saccharomyces cerevisiae [TaxId:559292]
    Gene: COQ5, DBI56, YML110C, YM8339.09C
    Database cross-references and differences (RAF-indexed):
  • Heterogens: TAM, SAM, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4obwA (A:)
mghhhhhqhmstkqklvgdvfssvanrydlmndvmslgihrlwkdhfinkldagkrpnst
tplnfidvaggsgdiafglldhaeskfgdtestmdivdinpdmlkegekrameqgkyfkd
prvrflvsngekleeidsdskdiytvsfgirnftdiqkglntayrvlkpggifyclefsk
ienplmdfayqqwakvlpvmgsmiandydsyqylvesierfpdqetfksmiekagfksag
yesltfgicaihwgikv

    Sequence, based on observed residues (ATOM records):
    >4obwA (A:)
vanrydlmndvmslgihrlwkdhfinkldagkrpnsttplnfidvaggsgdiafglldha
eskfgdtestmdivdinpdmlkegekrameqgkyfkdprvrflvsngekleeidsdskdi
ytvsfgirnftdiqkglntayrvlkpggifyclefskienplmdfayqqwakvlpvmgsm
iandydsyqylvesierfpdqetfksmiekagfksagyesltfgicaihwgikv

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4obwB (B:)
mghhhhhqhmstkqklvgdvfssvanrydlmndvmslgihrlwkdhfinkldagkrpnst
tplnfidvaggsgdiafglldhaeskfgdtestmdivdinpdmlkegekrameqgkyfkd
prvrflvsngekleeidsdskdiytvsfgirnftdiqkglntayrvlkpggifyclefsk
ienplmdfayqqwakvlpvmgsmiandydsyqylvesierfpdqetfksmiekagfksag
yesltfgicaihwgikv

    Sequence, based on observed residues (ATOM records):
    >4obwB (B:)
nrydlmndvmslgihrlwkdhfinkldagkrpnsttplnfidvaggsgdiafglldhaes
kfgdtestmdivdinpdmlkegekrameqgkyfkdprvrflvsngekleeidsdskdiyt
vsfgirnftdiqkglntayrvlkpggifyclefskienplmdfayqqwakvlpvmgsmia
ndydsyqylvesierfpdqetfksmiekagfksagyesltfgicaihwgikv

  • Chain 'C':
    Sequence, based on SEQRES records:
    >4obwC (C:)
mghhhhhqhmstkqklvgdvfssvanrydlmndvmslgihrlwkdhfinkldagkrpnst
tplnfidvaggsgdiafglldhaeskfgdtestmdivdinpdmlkegekrameqgkyfkd
prvrflvsngekleeidsdskdiytvsfgirnftdiqkglntayrvlkpggifyclefsk
ienplmdfayqqwakvlpvmgsmiandydsyqylvesierfpdqetfksmiekagfksag
yesltfgicaihwgikv

    Sequence, based on observed residues (ATOM records):
    >4obwC (C:)
svanrydlmndvmslgihrlwkdhfinkldagkrpnsttplnfidvaggsgdiafglldh
aeskfgdtestmdivdinpdmlkegekrameqgkyfkdprvrflvsngekleeidsdskd
iytvsfgirnftdiqkglntayrvlkpggifyclefskienplmdfayqqwakvlpvmgs
miandydsyqylvesierfpdqetfksmiekagfksagyesltfgicaihwgikv

  • Chain 'D':
    Sequence, based on SEQRES records:
    >4obwD (D:)
mghhhhhqhmstkqklvgdvfssvanrydlmndvmslgihrlwkdhfinkldagkrpnst
tplnfidvaggsgdiafglldhaeskfgdtestmdivdinpdmlkegekrameqgkyfkd
prvrflvsngekleeidsdskdiytvsfgirnftdiqkglntayrvlkpggifyclefsk
ienplmdfayqqwakvlpvmgsmiandydsyqylvesierfpdqetfksmiekagfksag
yesltfgicaihwgikv

    Sequence, based on observed residues (ATOM records):
    >4obwD (D:)
svanrydlmndvmslgihrlwkdhfinkldagkrpnsttplnfidvaggsgdiafglldh
aeskfgdtestmdivdinpdmlkegekrameqgkyfkdprvrflvsngekleeidsdskd
iytvsfgirnftdiqkglntayrvlkpggifyclefskienplmdfayqqwakvlpvmgs
miandydsyqylvesierfpdqetfksmiekagfksagyesltfgicaihwgikv