PDB entry 4o8m

View 4o8m on RCSB PDB site
Description: Crystal structure of a trap periplasmic solute binding protein actinobacillus succinogenes 130z, target EFI-510004, with bound L-galactonate
Class: transport protein
Keywords: TRAP PERIPLASMIC SOLUTE BINDING FAMILY, ENZYME FUNCTION INITIATIVE, EFI, Structural Genomics, transport protein
Deposited on 2013-12-28, released 2014-01-22
The last revision prior to the SCOPe 2.08 freeze date was dated 2015-02-25, with a file datestamp of 2015-02-20.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: 0.191
AEROSPACI score: 0.46 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: TRAP dicarboxylate transporter, DctP subunit
    Species: Actinobacillus succinogenes [TaxId:339671]
    Gene: Asuc_0158
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4o8ma_
  • Chain 'B':
    Compound: TRAP dicarboxylate transporter, DctP subunit
    Species: Actinobacillus succinogenes [TaxId:339671]
    Gene: Asuc_0158
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4o8mb_
  • Chain 'C':
    Compound: TRAP dicarboxylate transporter, DctP subunit
    Species: Actinobacillus succinogenes [TaxId:339671]
    Gene: Asuc_0158
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4o8mc_
  • Chain 'D':
    Compound: TRAP dicarboxylate transporter, DctP subunit
    Species: Actinobacillus succinogenes [TaxId:339671]
    Gene: Asuc_0158
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4o8md_
  • Chain 'E':
    Compound: TRAP dicarboxylate transporter, DctP subunit
    Species: Actinobacillus succinogenes [TaxId:339671]
    Gene: Asuc_0158
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4o8me_
  • Chain 'F':
    Compound: TRAP dicarboxylate transporter, DctP subunit
    Species: Actinobacillus succinogenes [TaxId:339671]
    Gene: Asuc_0158
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4o8mf_
  • Chain 'G':
    Compound: TRAP dicarboxylate transporter, DctP subunit
    Species: Actinobacillus succinogenes [TaxId:339671]
    Gene: Asuc_0158
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4o8mg_
  • Chain 'H':
    Compound: TRAP dicarboxylate transporter, DctP subunit
    Species: Actinobacillus succinogenes [TaxId:339671]
    Gene: Asuc_0158
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4o8mh_
  • Heterogens: CL, SO4, 2Q2, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4o8mA (A:)
mkllsksikailsvgllglainaqaeteimvaygnqpgepidkamhfwadkvkeksngdi
vfklfpssqlgsetevleqakfganiitisdygalmdivpdlgvinapyisqsfekkskl
lhsdwfkdlsdkldqhdihiivpdviygtrhlltkkpvtkpsdlkgmkvrvqhsrlflqt
inamggvptpmslsdvypglsegiidglenptvvlfggkffevaknlnltahtkhmspfv
agtafwnnltpeqqkiivdasremvtyggglieqaenealenlkkagvtvndvdlpafea
svadvistgfpewspnlyknvqeklsqfaenlyfqghhhhhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4o8mA (A:)
eteimvaygnqpgepidkamhfwadkvkeksngdivfklfpssqlgsetevleqakfgan
iitisdygalmdivpdlgvinapyisqsfekkskllhsdwfkdlsdkldqhdihiivpdv
iygtrhlltkkpvtkpsdlkgmkvrvqhsrlflqtinamggvptpmslsdvypglsegii
dglenptvvlfggkffevaknlnltahtkhmspfvagtafwnnltpeqqkiivdasremv
tyggglieqaenealenlkkagvtvndvdlpafeasvadvistgfpewspnlyknvqekl
sqf

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4o8mB (B:)
mkllsksikailsvgllglainaqaeteimvaygnqpgepidkamhfwadkvkeksngdi
vfklfpssqlgsetevleqakfganiitisdygalmdivpdlgvinapyisqsfekkskl
lhsdwfkdlsdkldqhdihiivpdviygtrhlltkkpvtkpsdlkgmkvrvqhsrlflqt
inamggvptpmslsdvypglsegiidglenptvvlfggkffevaknlnltahtkhmspfv
agtafwnnltpeqqkiivdasremvtyggglieqaenealenlkkagvtvndvdlpafea
svadvistgfpewspnlyknvqeklsqfaenlyfqghhhhhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4o8mB (B:)
eteimvaygnqpgepidkamhfwadkvkeksngdivfklfpssqlgsetevleqakfgan
iitisdygalmdivpdlgvinapyisqsfekkskllhsdwfkdlsdkldqhdihiivpdv
iygtrhlltkkpvtkpsdlkgmkvrvqhsrlflqtinamggvptpmslsdvypglsegii
dglenptvvlfggkffevaknlnltahtkhmspfvagtafwnnltpeqqkiivdasremv
tyggglieqaenealenlkkagvtvndvdlpafeasvadvistgfpewspnlyknvqekl
sqf

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4o8mC (C:)
mkllsksikailsvgllglainaqaeteimvaygnqpgepidkamhfwadkvkeksngdi
vfklfpssqlgsetevleqakfganiitisdygalmdivpdlgvinapyisqsfekkskl
lhsdwfkdlsdkldqhdihiivpdviygtrhlltkkpvtkpsdlkgmkvrvqhsrlflqt
inamggvptpmslsdvypglsegiidglenptvvlfggkffevaknlnltahtkhmspfv
agtafwnnltpeqqkiivdasremvtyggglieqaenealenlkkagvtvndvdlpafea
svadvistgfpewspnlyknvqeklsqfaenlyfqghhhhhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4o8mC (C:)
eteimvaygnqpgepidkamhfwadkvkeksngdivfklfpssqlgsetevleqakfgan
iitisdygalmdivpdlgvinapyisqsfekkskllhsdwfkdlsdkldqhdihiivpdv
iygtrhlltkkpvtkpsdlkgmkvrvqhsrlflqtinamggvptpmslsdvypglsegii
dglenptvvlfggkffevaknlnltahtkhmspfvagtafwnnltpeqqkiivdasremv
tyggglieqaenealenlkkagvtvndvdlpafeasvadvistgfpewspnlyknvqekl
sqf

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4o8mD (D:)
mkllsksikailsvgllglainaqaeteimvaygnqpgepidkamhfwadkvkeksngdi
vfklfpssqlgsetevleqakfganiitisdygalmdivpdlgvinapyisqsfekkskl
lhsdwfkdlsdkldqhdihiivpdviygtrhlltkkpvtkpsdlkgmkvrvqhsrlflqt
inamggvptpmslsdvypglsegiidglenptvvlfggkffevaknlnltahtkhmspfv
agtafwnnltpeqqkiivdasremvtyggglieqaenealenlkkagvtvndvdlpafea
svadvistgfpewspnlyknvqeklsqfaenlyfqghhhhhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4o8mD (D:)
eteimvaygnqpgepidkamhfwadkvkeksngdivfklfpssqlgsetevleqakfgan
iitisdygalmdivpdlgvinapyisqsfekkskllhsdwfkdlsdkldqhdihiivpdv
iygtrhlltkkpvtkpsdlkgmkvrvqhsrlflqtinamggvptpmslsdvypglsegii
dglenptvvlfggkffevaknlnltahtkhmspfvagtafwnnltpeqqkiivdasremv
tyggglieqaenealenlkkagvtvndvdlpafeasvadvistgfpewspnlyknvqekl
s

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4o8mE (E:)
mkllsksikailsvgllglainaqaeteimvaygnqpgepidkamhfwadkvkeksngdi
vfklfpssqlgsetevleqakfganiitisdygalmdivpdlgvinapyisqsfekkskl
lhsdwfkdlsdkldqhdihiivpdviygtrhlltkkpvtkpsdlkgmkvrvqhsrlflqt
inamggvptpmslsdvypglsegiidglenptvvlfggkffevaknlnltahtkhmspfv
agtafwnnltpeqqkiivdasremvtyggglieqaenealenlkkagvtvndvdlpafea
svadvistgfpewspnlyknvqeklsqfaenlyfqghhhhhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4o8mE (E:)
eteimvaygnqpgepidkamhfwadkvkeksngdivfklfpssqlgsetevleqakfgan
iitisdygalmdivpdlgvinapyisqsfekkskllhsdwfkdlsdkldqhdihiivpdv
iygtrhlltkkpvtkpsdlkgmkvrvqhsrlflqtinamggvptpmslsdvypglsegii
dglenptvvlfggkffevaknlnltahtkhmspfvagtafwnnltpeqqkiivdasremv
tyggglieqaenealenlkkagvtvndvdlpafeasvadvistgfpewspnlyknvqekl
sqf

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4o8mF (F:)
mkllsksikailsvgllglainaqaeteimvaygnqpgepidkamhfwadkvkeksngdi
vfklfpssqlgsetevleqakfganiitisdygalmdivpdlgvinapyisqsfekkskl
lhsdwfkdlsdkldqhdihiivpdviygtrhlltkkpvtkpsdlkgmkvrvqhsrlflqt
inamggvptpmslsdvypglsegiidglenptvvlfggkffevaknlnltahtkhmspfv
agtafwnnltpeqqkiivdasremvtyggglieqaenealenlkkagvtvndvdlpafea
svadvistgfpewspnlyknvqeklsqfaenlyfqghhhhhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4o8mF (F:)
eteimvaygnqpgepidkamhfwadkvkeksngdivfklfpssqlgsetevleqakfgan
iitisdygalmdivpdlgvinapyisqsfekkskllhsdwfkdlsdkldqhdihiivpdv
iygtrhlltkkpvtkpsdlkgmkvrvqhsrlflqtinamggvptpmslsdvypglsegii
dglenptvvlfggkffevaknlnltahtkhmspfvagtafwnnltpeqqkiivdasremv
tyggglieqaenealenlkkagvtvndvdlpafeasvadvistgfpewspnlyknvqekl
sqf

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >4o8mG (G:)
mkllsksikailsvgllglainaqaeteimvaygnqpgepidkamhfwadkvkeksngdi
vfklfpssqlgsetevleqakfganiitisdygalmdivpdlgvinapyisqsfekkskl
lhsdwfkdlsdkldqhdihiivpdviygtrhlltkkpvtkpsdlkgmkvrvqhsrlflqt
inamggvptpmslsdvypglsegiidglenptvvlfggkffevaknlnltahtkhmspfv
agtafwnnltpeqqkiivdasremvtyggglieqaenealenlkkagvtvndvdlpafea
svadvistgfpewspnlyknvqeklsqfaenlyfqghhhhhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4o8mG (G:)
teimvaygnqpgepidkamhfwadkvkeksngdivfklfpssqlgsetevleqakfgani
itisdygalmdivpdlgvinapyisqsfekkskllhsdwfkdlsdkldqhdihiivpdvi
ygtrhlltkkpvtkpsdlkgmkvrvqhsrlflqtinamggvptpmslsdvypglsegiid
glenptvvlfggkffevaknlnltahtkhmspfvagtafwnnltpeqqkiivdasremvt
yggglieqaenealenlkkagvtvndvdlpafeasvadvistgfpewspnlyknvqekls
qf

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >4o8mH (H:)
mkllsksikailsvgllglainaqaeteimvaygnqpgepidkamhfwadkvkeksngdi
vfklfpssqlgsetevleqakfganiitisdygalmdivpdlgvinapyisqsfekkskl
lhsdwfkdlsdkldqhdihiivpdviygtrhlltkkpvtkpsdlkgmkvrvqhsrlflqt
inamggvptpmslsdvypglsegiidglenptvvlfggkffevaknlnltahtkhmspfv
agtafwnnltpeqqkiivdasremvtyggglieqaenealenlkkagvtvndvdlpafea
svadvistgfpewspnlyknvqeklsqfaenlyfqghhhhhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4o8mH (H:)
teimvaygnqpgepidkamhfwadkvkeksngdivfklfpssqlgsetevleqakfgani
itisdygalmdivpdlgvinapyisqsfekkskllhsdwfkdlsdkldqhdihiivpdvi
ygtrhlltkkpvtkpsdlkgmkvrvqhsrlflqtinamggvptpmslsdvypglsegiid
glenptvvlfggkffevaknlnltahtkhmspfvagtafwnnltpeqqkiivdasremvt
yggglieqaenealenlkkagvtvndvdlpafeasvadvistgfpewspnlyknvqekls
qf