PDB entry 4o7m

View 4o7m on RCSB PDB site
Description: Crystal structure of a trap periplasmic solute binding protein from shewanella loihica PV-4, target EFI-510273, with bound L-malate
Class: transport protein
Keywords: TRAP PERIPLASMIC SOLUTE BINDING FAMILY, ENZYME FUNCTION INITIATIVE, EFI, Structural Genomics, transport protein
Deposited on 2013-12-25, released 2014-03-05
The last revision prior to the SCOPe 2.08 freeze date was dated 2015-02-25, with a file datestamp of 2015-02-20.
Experiment type: XRAY
Resolution: 1.5 Å
R-factor: 0.139
AEROSPACI score: 0.6 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: TRAP dicarboxylate transporter, DctP subunit
    Species: Shewanella loihica [TaxId:323850]
    Gene: Shew_1446
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4o7ma_
  • Chain 'B':
    Compound: TRAP dicarboxylate transporter, DctP subunit
    Species: Shewanella loihica [TaxId:323850]
    Gene: Shew_1446
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4o7mb_
  • Chain 'C':
    Compound: TRAP dicarboxylate transporter, DctP subunit
    Species: Shewanella loihica [TaxId:323850]
    Gene: Shew_1446
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4o7mc_
  • Chain 'D':
    Compound: TRAP dicarboxylate transporter, DctP subunit
    Species: Shewanella loihica [TaxId:323850]
    Gene: Shew_1446
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4o7md_
  • Heterogens: LMR, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4o7mA (A:)
mhhhhhhssgvdlgtenlyfqsmapteikfshvvaentpkgqmalkfkqlveerlpgeyq
vnvfpnsqlfgdnnelsalllndvqfvapslskferytkklqlfdlpflfkdmdavnrfq
qsdagqqllnsmkrkgvvglgylhngmkqfsassplvlpedaqgkkfrimasdvlaaqfq
aveaipvkkpfsevftllqtraidgqentwsniyskkfyevqsnitesnhgvldymvvts
ntfwkslpadkrkvikasldeaiaygneiaaakvnkdkqaiidskrsevtyltpeqraaw
vnamkpvwaqfedkigkdlidaavasne

    Sequence, based on observed residues (ATOM records): (download) 
    >4o7mA (A:)
pteikfshvvaentpkgqmalkfkqlveerlpgeyqvnvfpnsqlfgdnnelsalllndv
qfvapslskferytkklqlfdlpflfkdmdavnrfqqsdagqqllnsmkrkgvvglgylh
ngmkqfsassplvlpedaqgkkfrimasdvlaaqfqaveaipvkkpfsevftllqtraid
gqentwsniyskkfyevqsnitesnhgvldymvvtsntfwkslpadkrkvikasldeaia
ygneiaaakvnkdkqaiidskrsevtyltpeqraawvnamkpvwaqfedkigkdlidaav
asne

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4o7mB (B:)
mhhhhhhssgvdlgtenlyfqsmapteikfshvvaentpkgqmalkfkqlveerlpgeyq
vnvfpnsqlfgdnnelsalllndvqfvapslskferytkklqlfdlpflfkdmdavnrfq
qsdagqqllnsmkrkgvvglgylhngmkqfsassplvlpedaqgkkfrimasdvlaaqfq
aveaipvkkpfsevftllqtraidgqentwsniyskkfyevqsnitesnhgvldymvvts
ntfwkslpadkrkvikasldeaiaygneiaaakvnkdkqaiidskrsevtyltpeqraaw
vnamkpvwaqfedkigkdlidaavasne

    Sequence, based on observed residues (ATOM records): (download) 
    >4o7mB (B:)
apteikfshvvaentpkgqmalkfkqlveerlpgeyqvnvfpnsqlfgdnnelsalllnd
vqfvapslskferytkklqlfdlpflfkdmdavnrfqqsdagqqllnsmkrkgvvglgyl
hngmkqfsassplvlpedaqgkkfrimasdvlaaqfqaveaipvkkpfsevftllqtrai
dgqentwsniyskkfyevqsnitesnhgvldymvvtsntfwkslpadkrkvikasldeai
aygneiaaakvnkdkqaiidskrsevtyltpeqraawvnamkpvwaqfedkigkdlidaa
vasne

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4o7mC (C:)
mhhhhhhssgvdlgtenlyfqsmapteikfshvvaentpkgqmalkfkqlveerlpgeyq
vnvfpnsqlfgdnnelsalllndvqfvapslskferytkklqlfdlpflfkdmdavnrfq
qsdagqqllnsmkrkgvvglgylhngmkqfsassplvlpedaqgkkfrimasdvlaaqfq
aveaipvkkpfsevftllqtraidgqentwsniyskkfyevqsnitesnhgvldymvvts
ntfwkslpadkrkvikasldeaiaygneiaaakvnkdkqaiidskrsevtyltpeqraaw
vnamkpvwaqfedkigkdlidaavasne

    Sequence, based on observed residues (ATOM records): (download) 
    >4o7mC (C:)
apteikfshvvaentpkgqmalkfkqlveerlpgeyqvnvfpnsqlfgdnnelsalllnd
vqfvapslskferytkklqlfdlpflfkdmdavnrfqqsdagqqllnsmkrkgvvglgyl
hngmkqfsassplvlpedaqgkkfrimasdvlaaqfqaveaipvkkpfsevftllqtrai
dgqentwsniyskkfyevqsnitesnhgvldymvvtsntfwkslpadkrkvikasldeai
aygneiaaakvnkdkqaiidskrsevtyltpeqraawvnamkp

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4o7mD (D:)
mhhhhhhssgvdlgtenlyfqsmapteikfshvvaentpkgqmalkfkqlveerlpgeyq
vnvfpnsqlfgdnnelsalllndvqfvapslskferytkklqlfdlpflfkdmdavnrfq
qsdagqqllnsmkrkgvvglgylhngmkqfsassplvlpedaqgkkfrimasdvlaaqfq
aveaipvkkpfsevftllqtraidgqentwsniyskkfyevqsnitesnhgvldymvvts
ntfwkslpadkrkvikasldeaiaygneiaaakvnkdkqaiidskrsevtyltpeqraaw
vnamkpvwaqfedkigkdlidaavasne

    Sequence, based on observed residues (ATOM records): (download) 
    >4o7mD (D:)
pteikfshvvaentpkgqmalkfkqlveerlpgeyqvnvfpnsqlfgdnnelsalllndv
qfvapslskferytkklqlfdlpflfkdmdavnrfqqsdagqqllnsmkrkgvvglgylh
ngmkqfsassplvlpedaqgkkfrimasdvlaaqfqaveaipvkkpfsevftllqtraid
gqentwsniyskkfyevqsnitesnhgvldymvvtsntfwkslpadkrkvikasldeaia
ygneiaaakvnkdkqaiidskrsevtyltpeqraawvnamkpvwaqfedkigkdlidaav
asn