PDB entry 4o2f

View 4o2f on RCSB PDB site
Description: A peptide complexed with HLA-B*3901
Deposited on 2013-12-17, released 2014-07-23
The last revision was dated 2014-07-23, with a file datestamp of 2014-07-18.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.187
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: HLA class I histocompatibility antigen, B-39 alpha chain
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-B, HLAB
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M, CDABP0092, HDCMA22P
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Peptide from ATP-dependent RNA helicase DDX3X
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: HLA class I histocompatibility antigen, B-39 alpha chain
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-B, HLAB
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M, CDABP0092, HDCMA22P
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Peptide from ATP-dependent RNA helicase DDX3X
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >4o2fA (A:)
gshsmryfytsvsrpgrgeprfisvgyvddtqfvrfdsdaaspreeprapwieqegpeyw
drntqicktntqtdreslrnlrgyynqseagshtlqrmygcdvgpdgrllrghnqfaydg
kdyialnedlsswtaadtaaqitqrkweaarvaeqlrtylegtcvewlrrylengketlq
radppkthvthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdrt
fqkwaavvvpsgeeqrytchvqheglpkpltlrw

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >4o2fB (B:)
iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >4o2fC (C:)
hvavenal

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >4o2fD (D:)
gshsmryfytsvsrpgrgeprfisvgyvddtqfvrfdsdaaspreeprapwieqegpeyw
drntqicktntqtdreslrnlrgyynqseagshtlqrmygcdvgpdgrllrghnqfaydg
kdyialnedlsswtaadtaaqitqrkweaarvaeqlrtylegtcvewlrrylengketlq
radppkthvthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdrt
fqkwaavvvpsgeeqrytchvqheglpkpltlrw

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >4o2fE (E:)
iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >4o2fF (F:)
hvavenal