PDB entry 4o2d

View 4o2d on RCSB PDB site
Description: crystal structure of aspartyl-trna synthetase from mycobacterium smegmatis with bound aspartic acid
Deposited on 2013-12-17, released 2014-01-22
The last revision was dated 2015-04-22, with a file datestamp of 2015-04-17.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Aspartate--tRNA ligase
    Species: Mycobacterium smegmatis [TaxId:246196]
    Gene: aspS, MSMEG_3003, MSMEI_2928
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0QWN3
      • expression tag (22)
  • Chain 'B':
    Compound: Aspartate--tRNA ligase
    Species: Mycobacterium smegmatis [TaxId:246196]
    Gene: aspS, MSMEG_3003, MSMEI_2928
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0QWN3
      • expression tag (22)
  • Heterogens: ASP, TRS, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4o2dA (A:)
mahhhhhhmgtleaqtqgpgsmvlrthaagslrpadagqtvtlagwvarrrdhggvifid
lrdasgvsqvvfregdvlaaahrlraefcvavtgvvevrpegnenpeiptgqievnatel
tvlgesaplpfqldeqageearlkyryldlrregpgnalrlrskvnaaarsvlaehdfve
ietptltrstpegardflvparlqpgsfyalpqspqlfkqllmvagmeryyqiarcyrde
dfradrqpeftqldmemsfveaddviaiseqvlkavwatigydlplplprisyeeamrrf
gsdkpdlrfgielvecteyfkdttfrvfqapyvgavvmpggasqprrtldgwqefakqrg
hkglayvlvgedgtlggpvaknlsdaerdglvahvganpgdciffaagpakgarallgat
rieiakrldlidpnawaftwvvdfpmfeaadeataagdvavgsgawtamhhaftapkpds
vdtfdsdpgnalsdaydivcngneigggsirihrrdiqervfammgidhdeaqekfgfll
dafsygapphggiafgwdritallagvdsireviafpksgggvdpltdapapitpqqrke
sgidakpredkpkedakska

    Sequence, based on observed residues (ATOM records):
    >4o2dA (A:)
vlrthaagslrpadagqtvtlagwvarrrdhggvifidlrdasgvsqvvfregdvlaaah
rlraefcvavtgvvevrpegnenpeiptgqievnateltvlgesaplpfqldeqageear
lkyryldlrregpgnalrlrskvnaaarsvlaehdfveietptltrstpegardflvpar
lqpgsfyalpqspqlfkqllmvagmeryyqiarcyrdedfdrqpeftqldmemsfveadd
viaiseqvlkavwatigydlplplprisyeeamrrfgsdkpdlrfgielvecteyfkdtt
frvfqapyvgavvmpggasqprrtldgwqefakqrghkglayvlvgedgtlggpvaknls
daerdglvahvganpgdciffaagpakgarallgatrieiakrldlidpnawaftwvvdf
pmfeaadeataagdvavgsgawtamhhaftapkpdsvdtfdsdpgnalsdaydivcngne
igggsirihrrdiqervfammgidhdeaqekfgflldafsygapphggiafgwdritall
agvdsireviafpksgggvdpltdapapitpqqrkesgid

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4o2dB (B:)
mahhhhhhmgtleaqtqgpgsmvlrthaagslrpadagqtvtlagwvarrrdhggvifid
lrdasgvsqvvfregdvlaaahrlraefcvavtgvvevrpegnenpeiptgqievnatel
tvlgesaplpfqldeqageearlkyryldlrregpgnalrlrskvnaaarsvlaehdfve
ietptltrstpegardflvparlqpgsfyalpqspqlfkqllmvagmeryyqiarcyrde
dfradrqpeftqldmemsfveaddviaiseqvlkavwatigydlplplprisyeeamrrf
gsdkpdlrfgielvecteyfkdttfrvfqapyvgavvmpggasqprrtldgwqefakqrg
hkglayvlvgedgtlggpvaknlsdaerdglvahvganpgdciffaagpakgarallgat
rieiakrldlidpnawaftwvvdfpmfeaadeataagdvavgsgawtamhhaftapkpds
vdtfdsdpgnalsdaydivcngneigggsirihrrdiqervfammgidhdeaqekfgfll
dafsygapphggiafgwdritallagvdsireviafpksgggvdpltdapapitpqqrke
sgidakpredkpkedakska

    Sequence, based on observed residues (ATOM records):
    >4o2dB (B:)
vlrthaagslrpadagqtvtlagwvarrrdhggvifidlrdasgvsqvvfregdvlaaah
rlraefcvavtgvvevrpegnenpeiptgqievnateltvlgesaplpfqldeqageear
lkyryldlrregpgnalrlrskvnaaarsvlaehdfveietptltrstpegardflvpar
lqpgsfyalpqspqlfkqllmvagmeryyqiarcyrdedfdrqpeftqldmemsfveadd
viaiseqvlkavwatigydlplplprisyeeamrrfgsdkpdlrfgielvecteyfpyvg
avvmpwqefakqrgffaagpakgarallgatrieiakrldlidpnawaftwvvdfpmfea
adeataagdvavgsgawtamhhaftapkpdsvdtfdsdpgnalsdaydivcngneigggs
irihrrdiqervfammgidhdeaqekfgflldafsygapphggiafgwdritallagvds
ireviafpksgggvdpltdapapitpqqrkesgid