PDB entry 4o0i

View 4o0i on RCSB PDB site
Description: Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with 2'-MeSe-arabino-guanosine derivatized DNA
Class: transferase/DNA
Keywords: TRANSFERASE-DNA complex
Deposited on 2013-12-13, released 2014-12-17
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-11-22, with a file datestamp of 2017-11-17.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase I
    Species: Geobacillus stearothermophilus [TaxId:1422]
    Gene: DPO1
    Database cross-references and differences (RAF-indexed):
    • Uniprot D9N168 (1-579)
      • expression tag (0)
      • conflict (301)
      • conflict (416)
    Domains in SCOPe 2.08: d4o0ia1, d4o0ia2, d4o0ia3
  • Chain 'B':
    Compound: 5'-d(*c*(1tw)p*cp*gp*ap*ap*tp*tp*cp*gp*cp*g)-3'
  • Chain 'C':
    Compound: 5'-d(*c*(1tw)p*cp*gp*ap*ap*tp*tp*cp*gp*cp*g)-3'
  • Heterogens: SO4, GOL, NA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4o0iA (A:)
skmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpq
fvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakm
kqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllve
leqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgv
ilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgklqstyiegllkvvr
pdtkkvhtifnqaltqtgrlsstepnlqnipirleegrkirqafvpsesdwlifaadysq
ielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnfgivygi
sdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpdi
tsrnfnvrsfaermamntpiqgsaadiikkamidlnarlkeerlqahlllqvhdelilea
pkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.