PDB entry 4nzf

View 4nzf on RCSB PDB site
Description: crystal structure of abp-d197a (a gh27-b-l-arabinopyranosidase from geobacillus stearothermophilus), in complex with arabinose
Deposited on 2013-12-12, released 2014-12-03
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.19 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Abp, a GH27 beta-L-arabinopyranosidase
    Species: Geobacillus stearothermophilus [TaxId:1422]
    Database cross-references and differences (RAF-indexed):
    • PDB 4NZF
  • Chain 'B':
    Compound: Abp, a GH27 beta-L-arabinopyranosidase
    Species: Geobacillus stearothermophilus [TaxId:1422]
    Database cross-references and differences (RAF-indexed):
    • PDB 4NZF
  • Chain 'C':
    Compound: Abp, a GH27 beta-L-arabinopyranosidase
    Species: Geobacillus stearothermophilus [TaxId:1422]
    Database cross-references and differences (RAF-indexed):
    • PDB 4NZF
  • Chain 'D':
    Compound: Abp, a GH27 beta-L-arabinopyranosidase
    Species: Geobacillus stearothermophilus [TaxId:1422]
    Database cross-references and differences (RAF-indexed):
    • PDB 4NZF (Start-447)
  • Chain 'E':
    Compound: Abp, a GH27 beta-L-arabinopyranosidase
    Species: Geobacillus stearothermophilus [TaxId:1422]
    Database cross-references and differences (RAF-indexed):
    • PDB 4NZF
  • Chain 'F':
    Compound: Abp, a GH27 beta-L-arabinopyranosidase
    Species: Geobacillus stearothermophilus [TaxId:1422]
    Database cross-references and differences (RAF-indexed):
    • PDB 4NZF
  • Chain 'G':
    Compound: Abp, a GH27 beta-L-arabinopyranosidase
    Species: Geobacillus stearothermophilus [TaxId:1422]
    Database cross-references and differences (RAF-indexed):
    • PDB 4NZF
  • Chain 'H':
    Compound: Abp, a GH27 beta-L-arabinopyranosidase
    Species: Geobacillus stearothermophilus [TaxId:1422]
    Database cross-references and differences (RAF-indexed):
    • PDB 4NZF
  • Heterogens: GOL, ARB, SO4, CIT, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4nzfA (A:)
mssysnkdvqrgdasmhhyqwaktppmgwnswdcygasvtedevkgnaeymakylkpfgw
eyvvvdiqwyepganssiyrpfvplemdeysrlmpavnrfpsakggkgfkpladyihnlg
lkfgihimrgiprqavhqntpilgtnvgardiadtnsicpwntdmygvdhrkegaqayyd
slfqlyaqwgvdfvkvadivasklygthteeikmirkaidrcgrpivlslspgpapldha
tlfvenanmwrmtddfwdrwellydmfeqcykwcklvglghwpdadmlplghigirsvdg
ggtdrmtrftkdeqrtmmtlwiifrsplmfggelrdndewtlslltneevlhvhqngyga
rqvyrendhvvwtsqdaegnqfvamfnisekrsvvsvslkdlgcmepmkardlwakedlg
lvkhqlafelgphqsilvklspavgkgl

    Sequence, based on observed residues (ATOM records):
    >4nzfA (A:)
asmhhyqwaktppmgwnswdcygasvtedevkgnaeymakylkpfgweyvvvdiqwyepg
anssiyrpfvplemdeysrlmpavnrfpsakggkgfkpladyihnlglkfgihimrgipr
qavhqntpilgtnvgardiadtnsicpwntdmygvdhrkegaqayydslfqlyaqwgvdf
vkvadivasklygthteeikmirkaidrcgrpivlslspgpapldhatlfvenanmwrmt
ddfwdrwellydmfeqcykwcklvglghwpdadmlplghigirsvdgggtdrmtrftkde
qrtmmtlwiifrsplmfggelrdndewtlslltneevlhvhqngygarqvyrendhvvwt
sqdaegnqfvamfnisekrsvvsvslkdlgcmepmkardlwakedlglvkhqlafelgph
qsilvklspav

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4nzfB (B:)
mssysnkdvqrgdasmhhyqwaktppmgwnswdcygasvtedevkgnaeymakylkpfgw
eyvvvdiqwyepganssiyrpfvplemdeysrlmpavnrfpsakggkgfkpladyihnlg
lkfgihimrgiprqavhqntpilgtnvgardiadtnsicpwntdmygvdhrkegaqayyd
slfqlyaqwgvdfvkvadivasklygthteeikmirkaidrcgrpivlslspgpapldha
tlfvenanmwrmtddfwdrwellydmfeqcykwcklvglghwpdadmlplghigirsvdg
ggtdrmtrftkdeqrtmmtlwiifrsplmfggelrdndewtlslltneevlhvhqngyga
rqvyrendhvvwtsqdaegnqfvamfnisekrsvvsvslkdlgcmepmkardlwakedlg
lvkhqlafelgphqsilvklspavgkgl

    Sequence, based on observed residues (ATOM records):
    >4nzfB (B:)
smhhyqwaktppmgwnswdcygasvtedevkgnaeymakylkpfgweyvvvdiqwyepga
nssiyrpfvplemdeysrlmpavnrfpsakggkgfkpladyihnlglkfgihimrgiprq
avhqntpilgtnvgardiadtnsicpwntdmygvdhrkegaqayydslfqlyaqwgvdfv
kvadivasklygthteeikmirkaidrcgrpivlslspgpapldhatlfvenanmwrmtd
dfwdrwellydmfeqcykwcklvglghwpdadmlplghigirsvdgggtdrmtrftkdeq
rtmmtlwiifrsplmfggelrdndewtlslltneevlhvhqngygarqvyrendhvvwts
qdaegnqfvamfnisekrsvvsvslkdlgcmepmkardlwakedlglvkhqlafelgphq
silvklspav

  • Chain 'C':
    Sequence, based on SEQRES records:
    >4nzfC (C:)
mssysnkdvqrgdasmhhyqwaktppmgwnswdcygasvtedevkgnaeymakylkpfgw
eyvvvdiqwyepganssiyrpfvplemdeysrlmpavnrfpsakggkgfkpladyihnlg
lkfgihimrgiprqavhqntpilgtnvgardiadtnsicpwntdmygvdhrkegaqayyd
slfqlyaqwgvdfvkvadivasklygthteeikmirkaidrcgrpivlslspgpapldha
tlfvenanmwrmtddfwdrwellydmfeqcykwcklvglghwpdadmlplghigirsvdg
ggtdrmtrftkdeqrtmmtlwiifrsplmfggelrdndewtlslltneevlhvhqngyga
rqvyrendhvvwtsqdaegnqfvamfnisekrsvvsvslkdlgcmepmkardlwakedlg
lvkhqlafelgphqsilvklspavgkgl

    Sequence, based on observed residues (ATOM records):
    >4nzfC (C:)
dasmhhyqwaktppmgwnswdcygasvtedevkgnaeymakylkpfgweyvvvdiqwyep
ganssiyrpfvplemdeysrlmpavnrfpsakggkgfkpladyihnlglkfgihimrgip
rqavhqntpilgtnvgardiadtnsicpwntdmygvdhrkegaqayydslfqlyaqwgvd
fvkvadivasklygthteeikmirkaidrcgrpivlslspgpapldhatlfvenanmwrm
tddfwdrwellydmfeqcykwcklvglghwpdadmlplghigirsvdgggtdrmtrftkd
eqrtmmtlwiifrsplmfggelrdndewtlslltneevlhvhqngygarqvyrendhvvw
tsqdaegnqfvamfnisekrsvvsvslkdlgcmepmkardlwakedlglvkhqlafelgp
hqsilvklspav

  • Chain 'D':
    Sequence, based on SEQRES records:
    >4nzfD (D:)
mssysnkdvqrgdasmhhyqwaktppmgwnswdcygasvtedevkgnaeymakylkpfgw
eyvvvdiqwyepganssiyrpfvplemdeysrlmpavnrfpsakggkgfkpladyihnlg
lkfgihimrgiprqavhqntpilgtnvgardiadtnsicpwntdmygvdhrkegaqayyd
slfqlyaqwgvdfvkvadivasklygthteeikmirkaidrcgrpivlslspgpapldha
tlfvenanmwrmtddfwdrwellydmfeqcykwcklvglghwpdadmlplghigirsvdg
ggtdrmtrftkdeqrtmmtlwiifrsplmfggelrdndewtlslltneevlhvhqngyga
rqvyrendhvvwtsqdaegnqfvamfnisekrsvvsvslkdlgcmepmkardlwakedlg
lvkhqlafelgphqsilvklspavgkgl

    Sequence, based on observed residues (ATOM records):
    >4nzfD (D:)
asmhhyqwaktppmgwnswdcygasvtedevkgnaeymakylkpfgweyvvvdiqwyepg
anssiyrpfvplemdeysrlmpavnrfpsakggkgfkpladyihnlglkfgihimrgipr
qavhqntpilgtnvgardiadtnsicpwntdmygvdhrkegaqayydslfqlyaqwgvdf
vkvadivasklygthteeikmirkaidrcgrpivlslspgpapldhatlfvenanmwrmt
ddfwdrwellydmfeqcykwcklvglghwpdadmlplghigirsvdgggtdrmtrftkde
qrtmmtlwiifrsplmfggelrdndewtlslltneevlhvhqngygarqvyrendhvvwt
sqdaegnqfvamfnisekrsvvsvslkdlgcmepmkardlwakedlglvkhqlafelgph
qsilvklspavgkgl

  • Chain 'E':
    Sequence, based on SEQRES records:
    >4nzfE (E:)
mssysnkdvqrgdasmhhyqwaktppmgwnswdcygasvtedevkgnaeymakylkpfgw
eyvvvdiqwyepganssiyrpfvplemdeysrlmpavnrfpsakggkgfkpladyihnlg
lkfgihimrgiprqavhqntpilgtnvgardiadtnsicpwntdmygvdhrkegaqayyd
slfqlyaqwgvdfvkvadivasklygthteeikmirkaidrcgrpivlslspgpapldha
tlfvenanmwrmtddfwdrwellydmfeqcykwcklvglghwpdadmlplghigirsvdg
ggtdrmtrftkdeqrtmmtlwiifrsplmfggelrdndewtlslltneevlhvhqngyga
rqvyrendhvvwtsqdaegnqfvamfnisekrsvvsvslkdlgcmepmkardlwakedlg
lvkhqlafelgphqsilvklspavgkgl

    Sequence, based on observed residues (ATOM records):
    >4nzfE (E:)
asmhhyqwaktppmgwnswdcygasvtedevkgnaeymakylkpfgweyvvvdiqwyepg
anssiyrpfvplemdeysrlmpavnrfpsakggkgfkpladyihnlglkfgihimrgipr
qavhqntpilgtnvgardiadtnsicpwntdmygvdhrkegaqayydslfqlyaqwgvdf
vkvadivasklygthteeikmirkaidrcgrpivlslspgpapldhatlfvenanmwrmt
ddfwdrwellydmfeqcykwcklvglghwpdadmlplghigirsvdgggtdrmtrftkde
qrtmmtlwiifrsplmfggelrdndewtlslltneevlhvhqngygarqvyrendhvvwt
sqdaegnqfvamfnisekrsvvsvslkdlgcmepmkardlwakedlglvkhqlafelgph
qsilvklspav

  • Chain 'F':
    Sequence, based on SEQRES records:
    >4nzfF (F:)
mssysnkdvqrgdasmhhyqwaktppmgwnswdcygasvtedevkgnaeymakylkpfgw
eyvvvdiqwyepganssiyrpfvplemdeysrlmpavnrfpsakggkgfkpladyihnlg
lkfgihimrgiprqavhqntpilgtnvgardiadtnsicpwntdmygvdhrkegaqayyd
slfqlyaqwgvdfvkvadivasklygthteeikmirkaidrcgrpivlslspgpapldha
tlfvenanmwrmtddfwdrwellydmfeqcykwcklvglghwpdadmlplghigirsvdg
ggtdrmtrftkdeqrtmmtlwiifrsplmfggelrdndewtlslltneevlhvhqngyga
rqvyrendhvvwtsqdaegnqfvamfnisekrsvvsvslkdlgcmepmkardlwakedlg
lvkhqlafelgphqsilvklspavgkgl

    Sequence, based on observed residues (ATOM records):
    >4nzfF (F:)
smhhyqwaktppmgwnswdcygasvtedevkgnaeymakylkpfgweyvvvdiqwyepga
nssiyrpfvplemdeysrlmpavnrfpsakggkgfkpladyihnlglkfgihimrgiprq
avhqntpilgtnvgardiadtnsicpwntdmygvdhrkegaqayydslfqlyaqwgvdfv
kvadivasklygthteeikmirkaidrcgrpivlslspgpapldhatlfvenanmwrmtd
dfwdrwellydmfeqcykwcklvglghwpdadmlplghigirsvdgggtdrmtrftkdeq
rtmmtlwiifrsplmfggelrdndewtlslltneevlhvhqngygarqvyrendhvvwts
qdaegnqfvamfnisekrsvvsvslkdlgcmepmkardlwakedlglvkhqlafelgphq
silvklspav

  • Chain 'G':
    Sequence, based on SEQRES records:
    >4nzfG (G:)
mssysnkdvqrgdasmhhyqwaktppmgwnswdcygasvtedevkgnaeymakylkpfgw
eyvvvdiqwyepganssiyrpfvplemdeysrlmpavnrfpsakggkgfkpladyihnlg
lkfgihimrgiprqavhqntpilgtnvgardiadtnsicpwntdmygvdhrkegaqayyd
slfqlyaqwgvdfvkvadivasklygthteeikmirkaidrcgrpivlslspgpapldha
tlfvenanmwrmtddfwdrwellydmfeqcykwcklvglghwpdadmlplghigirsvdg
ggtdrmtrftkdeqrtmmtlwiifrsplmfggelrdndewtlslltneevlhvhqngyga
rqvyrendhvvwtsqdaegnqfvamfnisekrsvvsvslkdlgcmepmkardlwakedlg
lvkhqlafelgphqsilvklspavgkgl

    Sequence, based on observed residues (ATOM records):
    >4nzfG (G:)
asmhhyqwaktppmgwnswdcygasvtedevkgnaeymakylkpfgweyvvvdiqwyepg
anssiyrpfvplemdeysrlmpavnrfpsakggkgfkpladyihnlglkfgihimrgipr
qavhqntpilgtnvgardiadtnsicpwntdmygvdhrkegaqayydslfqlyaqwgvdf
vkvadivasklygthteeikmirkaidrcgrpivlslspgpapldhatlfvenanmwrmt
ddfwdrwellydmfeqcykwcklvglghwpdadmlplghigirsvdgggtdrmtrftkde
qrtmmtlwiifrsplmfggelrdndewtlslltneevlhvhqngygarqvyrendhvvwt
sqdaegnqfvamfnisekrsvvsvslkdlgcmepmkardlwakedlglvkhqlafelgph
qsilvklspav

  • Chain 'H':
    Sequence, based on SEQRES records:
    >4nzfH (H:)
mssysnkdvqrgdasmhhyqwaktppmgwnswdcygasvtedevkgnaeymakylkpfgw
eyvvvdiqwyepganssiyrpfvplemdeysrlmpavnrfpsakggkgfkpladyihnlg
lkfgihimrgiprqavhqntpilgtnvgardiadtnsicpwntdmygvdhrkegaqayyd
slfqlyaqwgvdfvkvadivasklygthteeikmirkaidrcgrpivlslspgpapldha
tlfvenanmwrmtddfwdrwellydmfeqcykwcklvglghwpdadmlplghigirsvdg
ggtdrmtrftkdeqrtmmtlwiifrsplmfggelrdndewtlslltneevlhvhqngyga
rqvyrendhvvwtsqdaegnqfvamfnisekrsvvsvslkdlgcmepmkardlwakedlg
lvkhqlafelgphqsilvklspavgkgl

    Sequence, based on observed residues (ATOM records):
    >4nzfH (H:)
smhhyqwaktppmgwnswdcygasvtedevkgnaeymakylkpfgweyvvvdiqwyepga
nssiyrpfvplemdeysrlmpavnrfpsakggkgfkpladyihnlglkfgihimrgiprq
avhqntpilgtnvgardiadtnsicpwntdmygvdhrkegaqayydslfqlyaqwgvdfv
kvadivasklygthteeikmirkaidrcgrpivlslspgpapldhatlfvenanmwrmtd
dfwdrwellydmfeqcykwcklvglghwpdadmlplghigirsvdgggtdrmtrftkdeq
rtmmtlwiifrsplmfggelrdndewtlslltneevlhvhqngygarqvyrendhvvwts
qdaegnqfvamfnisekrsvvsvslkdlgcmepmkardlwakedlglvkhqlafelgphq
silvklspav