PDB entry 4ny8
View 4ny8 on RCSB PDB site
Description: DNA polymerase beta with O6mG in the template base opposite to incoming non-hydrolyzable CTP with manganese in the active site
Class: transferase, lyase/DNA
Keywords: DNA binding, DNA polymerase fold, nucleotidyl transfer, nucleolus, TRANSFERASE, LYASE-DNA complex
Deposited on
2013-12-10, released
2014-04-16
The last revision prior to the SCOPe 2.08 freeze date was dated
2014-07-02, with a file datestamp of
2014-06-27.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: 0.209
AEROSPACI score: 0.3
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: DNA polymerase beta
Species: Homo sapiens [TaxId:9606]
Gene: POLB
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4ny8a1, d4ny8a2, d4ny8a3 - Chain 'D':
Compound: 5'-d(p*gp*tp*cp*gp*g)-3'
- Chain 'P':
Compound: 5'-d(*gp*cp*tp*gp*ap*tp*gp*cp*gp*a)-3'
- Chain 'T':
Compound: 5'-d(*cp*cp*gp*ap*cp*(6og)p*tp*cp*gp*cp*ap*tp*cp*ap*gp*c)-3'
- Heterogens: MN, NA, 0KX, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4ny8A (A:)
tlnggitdmltelanfeknvsqaihkynayrkaasviakyphkiksgaeakklpgvgtki
aekideflatgklrklekirqddtsssinfltrvsgigpsaarkfvdegiktledlrkne
dklnhhqriglkyfgdfekripreemlqmqdivlnevkkvdseyiatvcgsfrrgaessg
dmdvllthpsftsestkqpkllhqvveqlqkvhfitdtlskgetkfmgvcqlpskndeke
yphrridirlipkdqyycgvlyftgsdifnknmrahalekgftineytirplgvtgvage
plpvdsekdifdyiqwkyrepkdrse
Sequence, based on observed residues (ATOM records): (download)
>4ny8A (A:)
lnggitdmltelanfeknvsqaihkynayrkaasviakyphkiksgaeakklpgvgtkia
ekideflatgklrklekirqddtsssinfltrvsgigpsaarkfvdegiktledlrkned
klnhhqriglkyfgdfekripreemlqmqdivlnevkkvdseyiatvcgsfrrgaessgd
mdvllthpsftsesqpkllhqvveqlqkvhfitdtlskgetkfmgvcqlpskndekeyph
rridirlipkdqyycgvlyftgsdifnknmrahalekgftineytirplgvtgvageplp
vdsekdifdyiqwkyrepkdrse
- Chain 'D':
No sequence available.
- Chain 'P':
No sequence available.
- Chain 'T':
No sequence available.