PDB entry 4ny8

View 4ny8 on RCSB PDB site
Description: DNA polymerase beta with O6mG in the template base opposite to incoming non-hydrolyzable CTP with manganese in the active site
Class: transferase, lyase/DNA
Keywords: DNA binding, DNA polymerase fold, nucleotidyl transfer, nucleolus, TRANSFERASE, LYASE-DNA complex
Deposited on 2013-12-10, released 2014-04-16
The last revision prior to the SCOPe 2.08 freeze date was dated 2014-07-02, with a file datestamp of 2014-06-27.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: 0.209
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase beta
    Species: Homo sapiens [TaxId:9606]
    Gene: POLB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ny8a1, d4ny8a2, d4ny8a3
  • Chain 'D':
    Compound: 5'-d(p*gp*tp*cp*gp*g)-3'
  • Chain 'P':
    Compound: 5'-d(*gp*cp*tp*gp*ap*tp*gp*cp*gp*a)-3'
  • Chain 'T':
    Compound: 5'-d(*cp*cp*gp*ap*cp*(6og)p*tp*cp*gp*cp*ap*tp*cp*ap*gp*c)-3'
  • Heterogens: MN, NA, 0KX, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4ny8A (A:)
tlnggitdmltelanfeknvsqaihkynayrkaasviakyphkiksgaeakklpgvgtki
aekideflatgklrklekirqddtsssinfltrvsgigpsaarkfvdegiktledlrkne
dklnhhqriglkyfgdfekripreemlqmqdivlnevkkvdseyiatvcgsfrrgaessg
dmdvllthpsftsestkqpkllhqvveqlqkvhfitdtlskgetkfmgvcqlpskndeke
yphrridirlipkdqyycgvlyftgsdifnknmrahalekgftineytirplgvtgvage
plpvdsekdifdyiqwkyrepkdrse

    Sequence, based on observed residues (ATOM records): (download) 
    >4ny8A (A:)
lnggitdmltelanfeknvsqaihkynayrkaasviakyphkiksgaeakklpgvgtkia
ekideflatgklrklekirqddtsssinfltrvsgigpsaarkfvdegiktledlrkned
klnhhqriglkyfgdfekripreemlqmqdivlnevkkvdseyiatvcgsfrrgaessgd
mdvllthpsftsesqpkllhqvveqlqkvhfitdtlskgetkfmgvcqlpskndekeyph
rridirlipkdqyycgvlyftgsdifnknmrahalekgftineytirplgvtgvageplp
vdsekdifdyiqwkyrepkdrse

  • Chain 'D':
    No sequence available.

  • Chain 'P':
    No sequence available.

  • Chain 'T':
    No sequence available.