PDB entry 4ny1

View 4ny1 on RCSB PDB site
Description: X-ray structure of the unliganded uridine phosphorylase from Yersinia pseudotuberculosis at 1.7 A resolution
Class: transferase
Keywords: Rossmann Fold, Transferase, pyrimidine base, phosphate ion
Deposited on 2013-12-10, released 2015-01-07
The last revision prior to the SCOPe 2.08 freeze date was dated 2015-01-07, with a file datestamp of 2015-01-02.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: 0.163
AEROSPACI score: 0.49 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Uridine phosphorylase
    Species: Yersinia pseudotuberculosis [TaxId:273123]
    Gene: udp, YPTB0250
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ny1a_
  • Chain 'B':
    Compound: Uridine phosphorylase
    Species: Yersinia pseudotuberculosis [TaxId:273123]
    Gene: udp, YPTB0250
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ny1b_
  • Heterogens: NA, EDO, PEG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4ny1A (A:)
maksdvfhlgltkndlqgatlaivpgdpqrvekiaklmdnpvhlashreftswraeldgk
avivcstgiggpstsiaveelaqlgvrtflrigttgaiqphinvgdvlvttaavrldgas
lhfapmefpavadfscttalvnaaksvgatthigitassdtfypgqerydtfsgrvvrhf
kgsmeewqsmgvmnyemesatlltmcasqglragmvagvivnrtqqeipneetmkatesh
avkivveaarhll

    Sequence, based on observed residues (ATOM records): (download) 
    >4ny1A (A:)
ksdvfhlgltkndlqgatlaivpgdpqrvekiaklmdnpvhlashreftswraeldgkav
ivcstgiggpstsiaveelaqlgvrtflrigttgaiqphinvgdvlvttaavrldgaslh
fapmefpavadfscttalvnaaksvgatthigitassdtfypgqerydtfsgrvvrhfkg
smeewqsmgvmnyemesatlltmcasqglragmvagvivnrtqqeipneetmkateshav
kivveaarhll

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4ny1B (B:)
maksdvfhlgltkndlqgatlaivpgdpqrvekiaklmdnpvhlashreftswraeldgk
avivcstgiggpstsiaveelaqlgvrtflrigttgaiqphinvgdvlvttaavrldgas
lhfapmefpavadfscttalvnaaksvgatthigitassdtfypgqerydtfsgrvvrhf
kgsmeewqsmgvmnyemesatlltmcasqglragmvagvivnrtqqeipneetmkatesh
avkivveaarhll

    Sequence, based on observed residues (ATOM records): (download) 
    >4ny1B (B:)
ksdvfhlgltkndlqgatlaivpgdpqrvekiaklmdnpvhlashreftswraeldgkav
ivcstgiggpstsiaveelaqlgvrtflrigttgaiqphinvgdvlvttaavrldgaslh
fapmefpavadfscttalvnaaksvgatthigitassdtfypgqerydtfsgrvvrhfkg
smeewqsmgvmnyemesatlltmcasqglragmvagvivnrtqqeipneetmkateshav
kivveaarhll