PDB entry 4ny1
View 4ny1 on RCSB PDB site
Description: X-ray structure of the unliganded uridine phosphorylase from Yersinia pseudotuberculosis at 1.7 A resolution
Class: transferase
Keywords: Rossmann Fold, Transferase, pyrimidine base, phosphate ion
Deposited on
2013-12-10, released
2015-01-07
The last revision prior to the SCOPe 2.08 freeze date was dated
2015-01-07, with a file datestamp of
2015-01-02.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: 0.163
AEROSPACI score: 0.49
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Uridine phosphorylase
Species: Yersinia pseudotuberculosis [TaxId:273123]
Gene: udp, YPTB0250
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4ny1a_ - Chain 'B':
Compound: Uridine phosphorylase
Species: Yersinia pseudotuberculosis [TaxId:273123]
Gene: udp, YPTB0250
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4ny1b_ - Heterogens: NA, EDO, PEG, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4ny1A (A:)
maksdvfhlgltkndlqgatlaivpgdpqrvekiaklmdnpvhlashreftswraeldgk
avivcstgiggpstsiaveelaqlgvrtflrigttgaiqphinvgdvlvttaavrldgas
lhfapmefpavadfscttalvnaaksvgatthigitassdtfypgqerydtfsgrvvrhf
kgsmeewqsmgvmnyemesatlltmcasqglragmvagvivnrtqqeipneetmkatesh
avkivveaarhll
Sequence, based on observed residues (ATOM records): (download)
>4ny1A (A:)
ksdvfhlgltkndlqgatlaivpgdpqrvekiaklmdnpvhlashreftswraeldgkav
ivcstgiggpstsiaveelaqlgvrtflrigttgaiqphinvgdvlvttaavrldgaslh
fapmefpavadfscttalvnaaksvgatthigitassdtfypgqerydtfsgrvvrhfkg
smeewqsmgvmnyemesatlltmcasqglragmvagvivnrtqqeipneetmkateshav
kivveaarhll
- Chain 'B':
Sequence, based on SEQRES records: (download)
>4ny1B (B:)
maksdvfhlgltkndlqgatlaivpgdpqrvekiaklmdnpvhlashreftswraeldgk
avivcstgiggpstsiaveelaqlgvrtflrigttgaiqphinvgdvlvttaavrldgas
lhfapmefpavadfscttalvnaaksvgatthigitassdtfypgqerydtfsgrvvrhf
kgsmeewqsmgvmnyemesatlltmcasqglragmvagvivnrtqqeipneetmkatesh
avkivveaarhll
Sequence, based on observed residues (ATOM records): (download)
>4ny1B (B:)
ksdvfhlgltkndlqgatlaivpgdpqrvekiaklmdnpvhlashreftswraeldgkav
ivcstgiggpstsiaveelaqlgvrtflrigttgaiqphinvgdvlvttaavrldgaslh
fapmefpavadfscttalvnaaksvgatthigitassdtfypgqerydtfsgrvvrhfkg
smeewqsmgvmnyemesatlltmcasqglragmvagvivnrtqqeipneetmkateshav
kivveaarhll