PDB entry 4ntm

View 4ntm on RCSB PDB site
Description: QueD soaked with sepiapterin (selenomethionine substituted protein)
Class: lyase
Keywords: T-fold, 6-PTPS, queuosine biosynthesis enzyme, sepiapterin, LYASE
Deposited on 2013-12-02, released 2014-07-16
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-01-24, with a file datestamp of 2018-01-19.
Experiment type: XRAY
Resolution: 2.05 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 6-carboxy-5,6,7,8-tetrahydropterin synthase
    Species: Escherichia coli [TaxId:83333]
    Gene: b2765, JW2735, queD, ygcM
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ntma_
  • Chain 'B':
    Compound: 6-carboxy-5,6,7,8-tetrahydropterin synthase
    Species: Escherichia coli [TaxId:83333]
    Gene: b2765, JW2735, queD, ygcM
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ntmb_
  • Chain 'C':
    Compound: 6-carboxy-5,6,7,8-tetrahydropterin synthase
    Species: Escherichia coli [TaxId:83333]
    Gene: b2765, JW2735, queD, ygcM
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ntmc_
  • Chain 'D':
    Compound: 6-carboxy-5,6,7,8-tetrahydropterin synthase
    Species: Escherichia coli [TaxId:83333]
    Gene: b2765, JW2735, queD, ygcM
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ntmd_
  • Chain 'E':
    Compound: 6-carboxy-5,6,7,8-tetrahydropterin synthase
    Species: Escherichia coli [TaxId:83333]
    Gene: b2765, JW2735, queD, ygcM
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ntme_
  • Chain 'F':
    Compound: 6-carboxy-5,6,7,8-tetrahydropterin synthase
    Species: Escherichia coli [TaxId:83333]
    Gene: b2765, JW2735, queD, ygcM
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ntmf_
  • Heterogens: ZN, 2K8, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4ntmA (A:)
mmsttlfkdftfeaahrlphvpeghkcgrlhghsfmvrleitgevdphtgwiidfaelka
afkptyerldhhylndipglenptsevlakwiwdqvkpvvpllsavmvketctagciyrg
e

    Sequence, based on observed residues (ATOM records): (download) 
    >4ntmA (A:)
mmsttlfkdftfeaahrlphcgrlhghsfmvrleitgevdphtgwiidfaelkaafkpty
erldhhylndipglenptsevlakwiwdqvkpvvpllsavmvketctagciyrg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4ntmB (B:)
mmsttlfkdftfeaahrlphvpeghkcgrlhghsfmvrleitgevdphtgwiidfaelka
afkptyerldhhylndipglenptsevlakwiwdqvkpvvpllsavmvketctagciyrg
e

    Sequence, based on observed residues (ATOM records): (download) 
    >4ntmB (B:)
msttlfkdftfeaahrlphvpeghkcgrlhghsfmvrleitgevdphtgwiidfaelkaa
fkptyerldhhylndipglenptsevlakwiwdqvkpvvpllsavmvketctagciyrge

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4ntmC (C:)
mmsttlfkdftfeaahrlphvpeghkcgrlhghsfmvrleitgevdphtgwiidfaelka
afkptyerldhhylndipglenptsevlakwiwdqvkpvvpllsavmvketctagciyrg
e

    Sequence, based on observed residues (ATOM records): (download) 
    >4ntmC (C:)
sttlfkdftfeaahrlphvpegcgrlhghsfmvrleitgevdphtgwiidfaelkaafkp
tyerldhhylndipglenptsevlakwiwdqvkpvvpllsavmvketctagciyr

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4ntmD (D:)
mmsttlfkdftfeaahrlphvpeghkcgrlhghsfmvrleitgevdphtgwiidfaelka
afkptyerldhhylndipglenptsevlakwiwdqvkpvvpllsavmvketctagciyrg
e

    Sequence, based on observed residues (ATOM records): (download) 
    >4ntmD (D:)
msttlfkdftfeaahrlphvpeghkcgrlhghsfmvrleitgevdphtgwiidfaelkaa
fkptyerldhhylndipglenptsevlakwiwdqvkpvvpllsavmvketctagciyrge

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4ntmE (E:)
mmsttlfkdftfeaahrlphvpeghkcgrlhghsfmvrleitgevdphtgwiidfaelka
afkptyerldhhylndipglenptsevlakwiwdqvkpvvpllsavmvketctagciyrg
e

    Sequence, based on observed residues (ATOM records): (download) 
    >4ntmE (E:)
sttlfkdftfeaahrlphvpeghkcgrlhghsfmvrleitgevdphtgwiidfaelkaaf
kptyerldhhylndipglenptsevlakwiwdqvkpvvpllsavmvketctagciyrg

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4ntmF (F:)
mmsttlfkdftfeaahrlphvpeghkcgrlhghsfmvrleitgevdphtgwiidfaelka
afkptyerldhhylndipglenptsevlakwiwdqvkpvvpllsavmvketctagciyrg
e

    Sequence, based on observed residues (ATOM records): (download) 
    >4ntmF (F:)
ttlfkdftfeaahrlphvpeghkcgrlhghsfmvrleitgevdphtgwiidfaelkaafk
ptyerldhhylndipglenptsevlakwiwdqvkpvvpllsavmvketctagciyrge