PDB entry 4ns3

View 4ns3 on RCSB PDB site
Description: Crystal structure of the Delta-pyrroline-5-carboxylate dehydrogenase from Mycobacterium tuberculosis bound with NAD and cobalamin
Class: oxidoreductase
Keywords: Rossmann Fold, dehydrogenase, oxidoreductase, dehydrogenation
Deposited on 2013-11-27, released 2015-01-14
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-11-22, with a file datestamp of 2017-11-17.
Experiment type: XRAY
Resolution: 2.38 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Delta-1-pyrroline-5-carboxylate dehydrogenase
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Gene: MT1224, pruA, rocA, Rv1187
    Database cross-references and differences (RAF-indexed):
    • Uniprot L7N4Z6 (20-End)
      • expression tag (19)
      • engineered mutation (524)
      • conflict (524)
    Domains in SCOPe 2.07: d4ns3a1, d4ns3a2
  • Chain 'B':
    Compound: Delta-1-pyrroline-5-carboxylate dehydrogenase
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Gene: MT1224, pruA, rocA, Rv1187
    Database cross-references and differences (RAF-indexed):
    • Uniprot L7N4Z6 (20-End)
      • expression tag (19)
      • engineered mutation (524)
      • conflict (524)
    Domains in SCOPe 2.07: d4ns3b1, d4ns3b2
  • Chain 'C':
    Compound: Delta-1-pyrroline-5-carboxylate dehydrogenase
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Gene: MT1224, pruA, rocA, Rv1187
    Database cross-references and differences (RAF-indexed):
    • Uniprot L7N4Z6 (20-562)
      • expression tag (19)
      • engineered mutation (524)
      • conflict (524)
    Domains in SCOPe 2.07: d4ns3c1, d4ns3c2
  • Chain 'D':
    Compound: Delta-1-pyrroline-5-carboxylate dehydrogenase
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Gene: MT1224, pruA, rocA, Rv1187
    Database cross-references and differences (RAF-indexed):
    • Uniprot L7N4Z6 (20-562)
      • expression tag (19)
      • engineered mutation (524)
      • conflict (524)
    Domains in SCOPe 2.07: d4ns3d1, d4ns3d2
  • Chain 'E':
    Compound: Delta-1-pyrroline-5-carboxylate dehydrogenase
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Gene: MT1224, pruA, rocA, Rv1187
    Database cross-references and differences (RAF-indexed):
    • Uniprot L7N4Z6 (20-End)
      • expression tag (19)
      • engineered mutation (524)
      • conflict (524)
    Domains in SCOPe 2.07: d4ns3e1, d4ns3e2
  • Chain 'F':
    Compound: Delta-1-pyrroline-5-carboxylate dehydrogenase
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Gene: MT1224, pruA, rocA, Rv1187
    Database cross-references and differences (RAF-indexed):
    • Uniprot L7N4Z6 (20-End)
      • expression tag (19)
      • engineered mutation (524)
      • conflict (524)
    Domains in SCOPe 2.07: d4ns3f1, d4ns3f2
  • Heterogens: B12, NAD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4ns3A (A:)
mgsshhhhhhssglvprgshmdaitqvpvpanepvhdyapkspertrlrtelasladhpi
dlphviggrhrmgdgeridvvqphrhaarlgtltnathadaaaaveaamsaksdwaalpf
deraavflraadllagpwrekiaaatmlgqsksvyqaeidavcelidfwrfnvafarqil
eqqpisgpgewnridyrpldgfvyaitpfnftsiagnlptapalmgntviwkpsitqtla
ayltmqlleaaglppgvinlvtgdgfavsdvaladprlagihftgstatfghlwqwvgtn
igryhsyprlvgetggkdfvvahasarpdvlrtalirgafdyqgqkcsavsrafiahsvw
qrmgdellakaaelrygditdlsnyggalidqrafvknvdaierakgaaavtvavggeyd
dsegyfvrptvllsddptdesfvieyfgpllsvhvypderyeqildvidtgsryaltgav
iaddrqavltaldrlrfaagnfyvndkptgavvgrqpfggargsdtndkagsplnllrwt
sarsiketfvaatdhiyphmavd

    Sequence, based on observed residues (ATOM records): (download) 
    >4ns3A (A:)
hmdaitqvpvpanepvhdyapkspertrlrtelasladhpidlphviggrhrmgdgerid
vvqphrhaarlgtltnathadaaaaveaamsaksdwaalpfderaavflraadllagpwr
ekiaaatmlgqsksvyqaeidavcelidfwrfnvafarqileqqpisgpgewnridyrpl
dgfvyaitpfnftsiagnlptapalmgntviwkpsitqtlaayltmqlleaaglppgvin
lvtgdgfavsdvaladprlagihftgstatfghlwqwvgtnigryhsyprlvgetggkdf
vvahasarpdvlrtalirgafdyqgqkcsavsrafiahsvwqrmgdellakaaelrygdi
tdlsnyggalidqrafvknvdaierakgaaavtvavggeyddsegyfvrptvllsddptd
esfvieyfgpllsvhvypderyeqildvidtgsryaltgaviaddrqavltaldrlrfaa
gnfyvndkptgavvgrqpfggargsdtndkagsplnllrwtsarsiketfvaatdhiyph
ma

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4ns3B (B:)
mgsshhhhhhssglvprgshmdaitqvpvpanepvhdyapkspertrlrtelasladhpi
dlphviggrhrmgdgeridvvqphrhaarlgtltnathadaaaaveaamsaksdwaalpf
deraavflraadllagpwrekiaaatmlgqsksvyqaeidavcelidfwrfnvafarqil
eqqpisgpgewnridyrpldgfvyaitpfnftsiagnlptapalmgntviwkpsitqtla
ayltmqlleaaglppgvinlvtgdgfavsdvaladprlagihftgstatfghlwqwvgtn
igryhsyprlvgetggkdfvvahasarpdvlrtalirgafdyqgqkcsavsrafiahsvw
qrmgdellakaaelrygditdlsnyggalidqrafvknvdaierakgaaavtvavggeyd
dsegyfvrptvllsddptdesfvieyfgpllsvhvypderyeqildvidtgsryaltgav
iaddrqavltaldrlrfaagnfyvndkptgavvgrqpfggargsdtndkagsplnllrwt
sarsiketfvaatdhiyphmavd

    Sequence, based on observed residues (ATOM records): (download) 
    >4ns3B (B:)
hmdaitqvpvpanepvhdyapkspertrlrtelasladhpidlphviggrhrmgdgerid
vvqphrhaarlgtltnathadaaaaveaamsaksdwaalpfderaavflraadllagpwr
ekiaaatmlgqsksvyqaeidavcelidfwrfnvafarqileqqpisgpgewnridyrpl
dgfvyaitpfnftsiagnlptapalmgntviwkpsitqtlaayltmqlleaaglppgvin
lvtgdgfavsdvaladprlagihftgstatfghlwqwvgtnigryhsyprlvgetggkdf
vvahasarpdvlrtalirgafdyqgqkcsavsrafiahsvwqrmgdellakaaelrygdi
tdlsnyggalidqrafvknvdaierakgaavtvavggeyddsegyfvrptvllsddptde
sfvieyfgpllsvhvypderyeqildvidtgsryaltgaviaddrqavltaldrlrfaag
nfyvndkptgavvgrqpfggargsdtndkagsplnllrwtsarsiketfvaatdhiyphm
av

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4ns3C (C:)
mgsshhhhhhssglvprgshmdaitqvpvpanepvhdyapkspertrlrtelasladhpi
dlphviggrhrmgdgeridvvqphrhaarlgtltnathadaaaaveaamsaksdwaalpf
deraavflraadllagpwrekiaaatmlgqsksvyqaeidavcelidfwrfnvafarqil
eqqpisgpgewnridyrpldgfvyaitpfnftsiagnlptapalmgntviwkpsitqtla
ayltmqlleaaglppgvinlvtgdgfavsdvaladprlagihftgstatfghlwqwvgtn
igryhsyprlvgetggkdfvvahasarpdvlrtalirgafdyqgqkcsavsrafiahsvw
qrmgdellakaaelrygditdlsnyggalidqrafvknvdaierakgaaavtvavggeyd
dsegyfvrptvllsddptdesfvieyfgpllsvhvypderyeqildvidtgsryaltgav
iaddrqavltaldrlrfaagnfyvndkptgavvgrqpfggargsdtndkagsplnllrwt
sarsiketfvaatdhiyphmavd

    Sequence, based on observed residues (ATOM records): (download) 
    >4ns3C (C:)
hmdaitqvpvpanepvhdyapkspertrlrtelasladhpidlphviggrhrmgdgerid
vvqphrhaarlgtltnathadaaaaveaamsaksdwaalpfderaavflraadllagpwr
ekiaaatmlgqsksvyqaeidavcelidfwrfnvafarqileqqpisgpgewnridyrpl
dgfvyaitpfnftsiagnlptapalmgntviwkpsitqtlaayltmqlleaaglppgvin
lvtgdgfavsdvaladprlagihftgstatfghlwqwvgtnigryhsyprlvgetggkdf
vvahasarpdvlrtalirgafdyqgqkcsavsrafiahsvwqrmgdellakaaelrygdi
tdlsnyggalidqrafvknvdaierakgaaavtvavggeyddsegyfvrptvllsddptd
esfvieyfgpllsvhvypderyeqildvidtgsryaltgaviaddrqavltaldrlrfaa
gnfyvndkptgavvgrqpfggargsdtndkagsplnllrwtsarsiketfvaatdhiyph
mavd

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4ns3D (D:)
mgsshhhhhhssglvprgshmdaitqvpvpanepvhdyapkspertrlrtelasladhpi
dlphviggrhrmgdgeridvvqphrhaarlgtltnathadaaaaveaamsaksdwaalpf
deraavflraadllagpwrekiaaatmlgqsksvyqaeidavcelidfwrfnvafarqil
eqqpisgpgewnridyrpldgfvyaitpfnftsiagnlptapalmgntviwkpsitqtla
ayltmqlleaaglppgvinlvtgdgfavsdvaladprlagihftgstatfghlwqwvgtn
igryhsyprlvgetggkdfvvahasarpdvlrtalirgafdyqgqkcsavsrafiahsvw
qrmgdellakaaelrygditdlsnyggalidqrafvknvdaierakgaaavtvavggeyd
dsegyfvrptvllsddptdesfvieyfgpllsvhvypderyeqildvidtgsryaltgav
iaddrqavltaldrlrfaagnfyvndkptgavvgrqpfggargsdtndkagsplnllrwt
sarsiketfvaatdhiyphmavd

    Sequence, based on observed residues (ATOM records): (download) 
    >4ns3D (D:)
hmdaitqvpvpanepvhdyapkspertrlrtelasladhpidlphviggrhrmgdgerid
vvqphrhaarlgtltnathadaaaaveaamsaksdwaalpfderaavflraadllagpwr
ekiaaatmlgqsksvyqaeidavcelidfwrfnvafarqileqqpisgpgewnridyrpl
dgfvyaitpfnftsiagnlptapalmgntviwkpsitqtlaayltmqlleaaglppgvin
lvtgdgfavsdvaladprlagihftgstatfghlwqwvgtnigryhsyprlvgetggkdf
vvahasarpdvlrtalirgafdyqgqkcsavsrafiahsvwqrmgdellakaaelrygdi
tdlsnyggalidqrafvknvdaierakgaaavtvavggeyddsegyfvrptvllsddptd
esfvieyfgpllsvhvypderyeqildvidtgsryaltgaviaddrqavltaldrlrfaa
gnfyvndkptgavvgrqpfggargsdtndkagsplnllrwtsarsiketfvaatdhiyph
mavd

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4ns3E (E:)
mgsshhhhhhssglvprgshmdaitqvpvpanepvhdyapkspertrlrtelasladhpi
dlphviggrhrmgdgeridvvqphrhaarlgtltnathadaaaaveaamsaksdwaalpf
deraavflraadllagpwrekiaaatmlgqsksvyqaeidavcelidfwrfnvafarqil
eqqpisgpgewnridyrpldgfvyaitpfnftsiagnlptapalmgntviwkpsitqtla
ayltmqlleaaglppgvinlvtgdgfavsdvaladprlagihftgstatfghlwqwvgtn
igryhsyprlvgetggkdfvvahasarpdvlrtalirgafdyqgqkcsavsrafiahsvw
qrmgdellakaaelrygditdlsnyggalidqrafvknvdaierakgaaavtvavggeyd
dsegyfvrptvllsddptdesfvieyfgpllsvhvypderyeqildvidtgsryaltgav
iaddrqavltaldrlrfaagnfyvndkptgavvgrqpfggargsdtndkagsplnllrwt
sarsiketfvaatdhiyphmavd

    Sequence, based on observed residues (ATOM records): (download) 
    >4ns3E (E:)
hmdaitqvpvpanepvhdyapkspertrlrtelasladhpidlphviggrhrmgdgerid
vvqphrhaarlgtltnathadaaaaveaamsaksdwaalpfderaavflraadllagpwr
ekiaaatmlgqsksvyqaeidavcelidfwrfnvafarqileqqpisgpgewnridyrpl
dgfvyaitpfnftsiagnlptapalmgntviwkpsitqtlaayltmqlleaaglppgvin
lvtgdgfavsdvaladprlagihftgstatfghlwqwvgtnigryhsyprlvgetggkdf
vvahasarpdvlrtalirgafdyqgqkcsavsrafiahsvwqrmgdellakaaelrygdi
tdlsnyggalidqrafvknvdaierakgaaavtvavggeyddsegyfvrptvllsddpyf
gpllsvhvypderyeqildvidtgyaltgaviaddrqavltaldrlrfaagnfyvndkpt
avvgrqpfggargsdtndkagsplnllrwtsarsiketfvaatdhiyphmav

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4ns3F (F:)
mgsshhhhhhssglvprgshmdaitqvpvpanepvhdyapkspertrlrtelasladhpi
dlphviggrhrmgdgeridvvqphrhaarlgtltnathadaaaaveaamsaksdwaalpf
deraavflraadllagpwrekiaaatmlgqsksvyqaeidavcelidfwrfnvafarqil
eqqpisgpgewnridyrpldgfvyaitpfnftsiagnlptapalmgntviwkpsitqtla
ayltmqlleaaglppgvinlvtgdgfavsdvaladprlagihftgstatfghlwqwvgtn
igryhsyprlvgetggkdfvvahasarpdvlrtalirgafdyqgqkcsavsrafiahsvw
qrmgdellakaaelrygditdlsnyggalidqrafvknvdaierakgaaavtvavggeyd
dsegyfvrptvllsddptdesfvieyfgpllsvhvypderyeqildvidtgsryaltgav
iaddrqavltaldrlrfaagnfyvndkptgavvgrqpfggargsdtndkagsplnllrwt
sarsiketfvaatdhiyphmavd

    Sequence, based on observed residues (ATOM records): (download) 
    >4ns3F (F:)
hmdaitqvpvpanepvhdyapkspertrlrtelasladhpidlphviggrhrmgdgerid
vvqphrhaarlgtltnathadaaaaveaamsaksdwaalpfderaavflraadllagpwr
ekiaaatmlgqsksvyqaeidavcelidfwrfnvafarqileqqpisgpgewnridyrpl
dgfvyaitpfnftsiagnlptapalmgntviwkpsitqtlaayltmqlleaaglppgvin
lvtgdgfavsdvaladprlagihftgstatfghlwqwvgtnigryhsyprlvgetggkdf
vvahasarpdvlrtalirgafdyqgqkcsavsrafiahsvwqrmgdellakaaelrygdi
tdlsnyggalidqrafvknvdaierakgaaavtvavggeyddsegyfvrptvllsddpey
fgpllsvhvypderyeqildvidtgsryaltgaviaddrqavltaldrlrfaagnfyvnd
kptgavvgrqpfggargsdtndkagsplnllrwtsarsiketfvaatdhiyphma