PDB entry 4nrj

View 4nrj on RCSB PDB site
Description: Structure of hemagglutinin with F95Y mutation of influenza virus B/Lee/40
Class: Viral Protein
Keywords: HA, Viral Protein
Deposited on 2013-11-26, released 2014-03-12
The last revision prior to the SCOPe 2.07 freeze date was dated 2014-03-12, with a file datestamp of 2014-03-07.
Experiment type: XRAY
Resolution: 2.53 Å
R-factor: 0.188
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hemagglutinin HA1 chain
    Species: Influenza B virus [TaxId:107412]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03460 (0-End)
      • conflict (37)
      • conflict (75)
      • conflict (89)
      • engineered mutation (94)
      • conflict (146)
      • conflict (166)
    Domains in SCOPe 2.07: d4nrja_
  • Chain 'B':
    Compound: Hemagglutinin HA2 chain
    Species: Influenza B virus [TaxId:107412]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03460 (0-End)
      • conflict (53)
    Domains in SCOPe 2.07: d4nrjb_
  • Chain 'C':
    Compound: Hemagglutinin HA1 chain
    Species: Influenza B virus [TaxId:107412]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03460 (0-End)
      • conflict (37)
      • conflict (75)
      • conflict (89)
      • engineered mutation (94)
      • conflict (146)
      • conflict (166)
    Domains in SCOPe 2.07: d4nrjc_
  • Chain 'D':
    Compound: Hemagglutinin HA2 chain
    Species: Influenza B virus [TaxId:107412]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03460 (0-End)
      • conflict (53)
    Domains in SCOPe 2.07: d4nrjd_
  • Chain 'E':
    Compound: Hemagglutinin HA1 chain
    Species: Influenza B virus [TaxId:107412]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03460 (0-End)
      • conflict (37)
      • conflict (75)
      • conflict (89)
      • engineered mutation (94)
      • conflict (146)
      • conflict (166)
    Domains in SCOPe 2.07: d4nrje_
  • Chain 'F':
    Compound: Hemagglutinin HA2 chain
    Species: Influenza B virus [TaxId:107412]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03460 (0-End)
      • conflict (53)
    Domains in SCOPe 2.07: d4nrjf_
  • Heterogens: NAG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >4nrjA (A:)
    drictgitssnsphvvktatqgevnvtgvipltttptrshfanlkgtqtrgklcpncfnc
    tdldvalgrpkcmgnipsakvsilhevkpvtsgcypimhdrtkirqlpnllrgyenirls
    tsnvintetapggpykvgtsgscpnvtngngffntmawvipkdnnkiainpvtvevpyic
    segedqitvwgfhsddktqmerlygdsnpqkftssangvtthyvsqiggfpnqtedeglk
    qsgrivvdymvqkpgktgtivyqrgillpqkvwcasgrskvikgslpligeadclhekyg
    glnkskpyytgehakaigncpiwvktplklangtkyrppakllker
    

    Sequence, based on observed residues (ATOM records): (download)
    >4nrjA (A:)
    drictgitssnsphvvktatqgevnvtgvipltttptrshfanlkgtqtrgklcpncfnc
    tdldvalgrpkcmgnipsakvsilhevkpvtsgcypimhdrtkirqlpnllrgyenirls
    tsnvintetapggpykvgtsgscpnvtngngffntmawvipkdnnkiainpvtvevpyic
    segedqitvwgfhsddktqmerlygdsnpqkftssangvtthyvsqiggfpnqtedeglk
    qsgrivvdymvqkpgktgtivyqrgillpqkvwcasgrskvikgslpligeadclhekyg
    glnkskpyytgehakaigncpiwvktplklangtkyrppak
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >4nrjB (B:)
    gffgaiagfleggwegmiagwhgytshgahgvavaadlkstqeainkitknlnslselev
    knlqrlsgamnelhdeileldekvddlradtissqielavllsnegiinsedehllaler
    klkkmlgpsaveigngcfetkhkcnqtcldriaagtfnagdfslptfdslnitaasgalv
    pr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4nrjB (B:)
    gffgaiagfleggwegmiagwhgytshgahgvavaadlkstqeainkitknlnslselev
    knlqrlsgamnelhdeileldekvddlradtissqielavllsnegiinsedehllaler
    klkkmlgpsaveigngcfetkhkcnqtcldriaagtfnagdfslptfdsl
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >4nrjC (C:)
    drictgitssnsphvvktatqgevnvtgvipltttptrshfanlkgtqtrgklcpncfnc
    tdldvalgrpkcmgnipsakvsilhevkpvtsgcypimhdrtkirqlpnllrgyenirls
    tsnvintetapggpykvgtsgscpnvtngngffntmawvipkdnnkiainpvtvevpyic
    segedqitvwgfhsddktqmerlygdsnpqkftssangvtthyvsqiggfpnqtedeglk
    qsgrivvdymvqkpgktgtivyqrgillpqkvwcasgrskvikgslpligeadclhekyg
    glnkskpyytgehakaigncpiwvktplklangtkyrppakllker
    

    Sequence, based on observed residues (ATOM records): (download)
    >4nrjC (C:)
    drictgitssnsphvvktatqgevnvtgvipltttptrshfanlkgtqtrgklcpncfnc
    tdldvalgrpkcmgnipsakvsilhevkpvtsgcypimhdrtkirqlpnllrgyenirls
    tsnvintetapggpykvgtsgscpnvtngngffntmawvipkdnnkiainpvtvevpyic
    segedqitvwgfhsddktqmerlygdsnpqkftssangvtthyvsqiggfpnqtedeglk
    qsgrivvdymvqkpgktgtivyqrgillpqkvwcasgrskvikgslpligeadclhekyg
    glnkskpyytgehakaigncpiwvktplklangtkyrppakl
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >4nrjD (D:)
    gffgaiagfleggwegmiagwhgytshgahgvavaadlkstqeainkitknlnslselev
    knlqrlsgamnelhdeileldekvddlradtissqielavllsnegiinsedehllaler
    klkkmlgpsaveigngcfetkhkcnqtcldriaagtfnagdfslptfdslnitaasgalv
    pr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4nrjD (D:)
    gffgaiagfleggwegmiagwhgytshgahgvavaadlkstqeainkitknlnslselev
    knlqrlsgamnelhdeileldekvddlradtissqielavllsnegiinsedehllaler
    klkkmlgpsaveigngcfetkhkcnqtcldriaagtfnagdfslptfds
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >4nrjE (E:)
    drictgitssnsphvvktatqgevnvtgvipltttptrshfanlkgtqtrgklcpncfnc
    tdldvalgrpkcmgnipsakvsilhevkpvtsgcypimhdrtkirqlpnllrgyenirls
    tsnvintetapggpykvgtsgscpnvtngngffntmawvipkdnnkiainpvtvevpyic
    segedqitvwgfhsddktqmerlygdsnpqkftssangvtthyvsqiggfpnqtedeglk
    qsgrivvdymvqkpgktgtivyqrgillpqkvwcasgrskvikgslpligeadclhekyg
    glnkskpyytgehakaigncpiwvktplklangtkyrppakllker
    

    Sequence, based on observed residues (ATOM records): (download)
    >4nrjE (E:)
    drictgitssnsphvvktatqgevnvtgvipltttptrshfanlkgtqtrgklcpncfnc
    tdldvalgrpkcmgnipsakvsilhevkpvtsgcypimhdrtkirqlpnllrgyenirls
    tsnvintetapggpykvgtsgscpnvtngngffntmawvipkdnnkiainpvtvevpyic
    segedqitvwgfhsddktqmerlygdsnpqkftssangvtthyvsqiggfpnqtedeglk
    qsgrivvdymvqkpgktgtivyqrgillpqkvwcasgrskvikgslpligeadclhekyg
    glnkskpyytgehakaigncpiwvktplklangtkyrppak
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >4nrjF (F:)
    gffgaiagfleggwegmiagwhgytshgahgvavaadlkstqeainkitknlnslselev
    knlqrlsgamnelhdeileldekvddlradtissqielavllsnegiinsedehllaler
    klkkmlgpsaveigngcfetkhkcnqtcldriaagtfnagdfslptfdslnitaasgalv
    pr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4nrjF (F:)
    gffgaiagfleggwegmiagwhgytshgahgvavaadlkstqeainkitknlnslselev
    knlqrlsgamnelhdeileldekvddlradtissqielavllsnegiinsedehllaler
    klkkmlgpsaveigngcfetkhkcnqtcldriaagtfnagdfslptfd