PDB entry 4nqx

View 4nqx on RCSB PDB site
Description: Crystal Structure of HLA A*0101 in complex with NP44-S7N, an 9-mer influenza epitope
Deposited on 2013-11-26, released 2013-12-25
The last revision was dated 2014-02-05, with a file datestamp of 2014-01-31.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.271
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: HLA class I histocompatibility antigen, A-1 alpha chain
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-A, HLAA
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M, CDABP0092, HDCMA22P
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61769 (1-99)
      • expression tag (0)
  • Chain 'C':
    Compound: HLA class I histocompatibility antigen, A-1 alpha chain
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-A, HLAA
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M, CDABP0092, HDCMA22P
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61769 (1-99)
      • expression tag (0)
  • Chain 'E':
    Compound: HLA class I histocompatibility antigen, A-1 alpha chain
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-A, HLAA
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M, CDABP0092, HDCMA22P
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: HLA class I histocompatibility antigen, A-1 alpha chain
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-A, HLAA
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M, CDABP0092, HDCMA22P
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61769 (1-99)
      • expression tag (0)
  • Chain 'I':
    Compound: HLA class I histocompatibility antigen, A-1 alpha chain
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-A, HLAA
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M, CDABP0092, HDCMA22P
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61769 (1-99)
      • expression tag (0)
  • Chain 'K':
    Compound: HLA class I histocompatibility antigen, A-1 alpha chain
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-A, HLAA
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M, CDABP0092, HDCMA22P
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61769 (1-99)
      • expression tag (0)
  • Chain 'M':
    Compound: NP44-S7N mutant peptide, CTELKLNDY
    Species: H7N9 subtype, synthetic [TaxId:333278]
    Database cross-references and differences (RAF-indexed):
    • PDB 4NQX (0-8)
  • Chain 'N':
    Compound: NP44-S7N mutant peptide, CTELKLNDY
    Species: H7N9 subtype, synthetic [TaxId:333278]
    Database cross-references and differences (RAF-indexed):
    • PDB 4NQX (0-8)
  • Chain 'O':
    Compound: NP44-S7N mutant peptide, CTELKLNDY
    Species: H7N9 subtype, synthetic [TaxId:333278]
    Database cross-references and differences (RAF-indexed):
    • PDB 4NQX (0-8)
  • Chain 'P':
    Compound: NP44-S7N mutant peptide, CTELKLNDY
    Species: H7N9 subtype, synthetic [TaxId:333278]
    Database cross-references and differences (RAF-indexed):
    • PDB 4NQX (0-8)
  • Chain 'Q':
    Compound: NP44-S7N mutant peptide, CTELKLNDY
    Species: H7N9 subtype, synthetic [TaxId:333278]
    Database cross-references and differences (RAF-indexed):
    • PDB 4NQX (0-8)
  • Chain 'R':
    Compound: NP44-S7N mutant peptide, CTELKLNDY
    Species: H7N9 subtype, synthetic [TaxId:333278]
    Database cross-references and differences (RAF-indexed):
    • PDB 4NQX (0-8)
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4nqxA (A:)
gshsmryfftsvsrpgrgeprfiavgyvddtqfvrfdsdaasqkmeprapwieqegpeyw
dqetrnmkahsqtdranlgtlrgyynqsedgshtiqimygcdvgpdgrflrgyrqdaydg
kdyialnedlrswtaadmaaqitkrkweavhaaeqrrvylegrcvdglrrylengketlq
rtdppkthmthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdgt
fqkwaavvvpsgeeqrytchvqheglpkpltlrwelssqptipi

    Sequence, based on observed residues (ATOM records):
    >4nqxA (A:)
gshsmryfftsvsrpgrgeprfiavgyvddtqfvrfdsdaasqkmeprapwieqegpeyw
dqetrnmkahsqtdranlgtlrgyynqsedgshtiqimygcdvgpdgrflrgyrqdaydg
kdyialnedlrswtaadmaaqitkrkweavhaaeqrrvylegrcvdglrrylengketlq
rtdppkthmthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdgt
fqkwaavvvpsgeeqrytchvqheglpkpltlrw

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >4nqxB (B:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'C':
    Sequence, based on SEQRES records:
    >4nqxC (C:)
gshsmryfftsvsrpgrgeprfiavgyvddtqfvrfdsdaasqkmeprapwieqegpeyw
dqetrnmkahsqtdranlgtlrgyynqsedgshtiqimygcdvgpdgrflrgyrqdaydg
kdyialnedlrswtaadmaaqitkrkweavhaaeqrrvylegrcvdglrrylengketlq
rtdppkthmthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdgt
fqkwaavvvpsgeeqrytchvqheglpkpltlrwelssqptipi

    Sequence, based on observed residues (ATOM records):
    >4nqxC (C:)
gshsmryfftsvsrpgrgeprfiavgyvddtqfvrfdsdaasqkmeprapwieqegpeyw
dqetrnmkahsqtdranlgtlrgyynqsedgshtiqimygcdvgpdgrflrgyrqdaydg
kdyialnedlrswtaadmaaqitkrkweavhaaeqrrvylegrcvdglrrylengketlq
rtdppkthmthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdgt
fqkwaavvvpsgeeqrytchvqheglpkpltlrwe

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >4nqxD (D:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'E':
    Sequence, based on SEQRES records:
    >4nqxE (E:)
gshsmryfftsvsrpgrgeprfiavgyvddtqfvrfdsdaasqkmeprapwieqegpeyw
dqetrnmkahsqtdranlgtlrgyynqsedgshtiqimygcdvgpdgrflrgyrqdaydg
kdyialnedlrswtaadmaaqitkrkweavhaaeqrrvylegrcvdglrrylengketlq
rtdppkthmthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdgt
fqkwaavvvpsgeeqrytchvqheglpkpltlrwelssqptipi

    Sequence, based on observed residues (ATOM records):
    >4nqxE (E:)
gshsmryfftsvsrpgrgeprfiavgyvddtqfvrfdsdaasqkmeprapwieqegpeyw
dqetrnmkahsqtdranlgtlrgyynqsedgshtiqimygcdvgpdgrflrgyrqdaydg
kdyialnedlrswtaadmaaqitkrkweavhaaeqrrvylegrcvdglrrylengketlq
rtdppkthmthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdgt
fqkwaavvvpsgeeqrytchvqheglpkpltlrwe

  • Chain 'F':
    Sequence, based on SEQRES records:
    >4nqxF (F:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

    Sequence, based on observed residues (ATOM records):
    >4nqxF (F:)
iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'G':
    Sequence, based on SEQRES records:
    >4nqxG (G:)
gshsmryfftsvsrpgrgeprfiavgyvddtqfvrfdsdaasqkmeprapwieqegpeyw
dqetrnmkahsqtdranlgtlrgyynqsedgshtiqimygcdvgpdgrflrgyrqdaydg
kdyialnedlrswtaadmaaqitkrkweavhaaeqrrvylegrcvdglrrylengketlq
rtdppkthmthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdgt
fqkwaavvvpsgeeqrytchvqheglpkpltlrwelssqptipi

    Sequence, based on observed residues (ATOM records):
    >4nqxG (G:)
gshsmryfftsvsrpgrgeprfiavgyvddtqfvrfdsdaasqkmeprapwieqegpeyw
dqetrnmkahsqtdranlgtlrgyynqsedgshtiqimygcdvgpdgrflrgyrqdaydg
kdyialnedlrswtaadmaaqitkrkweavhaaeqrrvylegrcvdglrrylengketlq
rtdppkthmthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdgt
fqkwaavvvpsgeeqrytchvqheglpkpltlrw

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >4nqxH (H:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'I':
    Sequence, based on SEQRES records:
    >4nqxI (I:)
gshsmryfftsvsrpgrgeprfiavgyvddtqfvrfdsdaasqkmeprapwieqegpeyw
dqetrnmkahsqtdranlgtlrgyynqsedgshtiqimygcdvgpdgrflrgyrqdaydg
kdyialnedlrswtaadmaaqitkrkweavhaaeqrrvylegrcvdglrrylengketlq
rtdppkthmthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdgt
fqkwaavvvpsgeeqrytchvqheglpkpltlrwelssqptipi

    Sequence, based on observed residues (ATOM records):
    >4nqxI (I:)
gshsmryfftsvsrpgrgeprfiavgyvddtqfvrfdsdaasqkmeprapwieqegpeyw
dqetrnmkahsqtdranlgtlrgyynqsedgshtiqimygcdvgpdgrflrgyrqdaydg
kdyialnedlrswtaadmaaqitkrkweavhaaeqrrvylegrcvdglrrylengketlq
rtdppkthmthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdgt
fqkwaavvvpsgeeqrytchvqheglpkpltlrw

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records:
    >4nqxJ (J:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'K':
    Sequence, based on SEQRES records:
    >4nqxK (K:)
gshsmryfftsvsrpgrgeprfiavgyvddtqfvrfdsdaasqkmeprapwieqegpeyw
dqetrnmkahsqtdranlgtlrgyynqsedgshtiqimygcdvgpdgrflrgyrqdaydg
kdyialnedlrswtaadmaaqitkrkweavhaaeqrrvylegrcvdglrrylengketlq
rtdppkthmthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdgt
fqkwaavvvpsgeeqrytchvqheglpkpltlrwelssqptipi

    Sequence, based on observed residues (ATOM records):
    >4nqxK (K:)
gshsmryfftsvsrpgrgeprfiavgyvddtqfvrfdsdaasqkmeprapwieqegpeyw
dqetrnmkahsqtdranlgtlrgyynqsedgshtiqimygcdvgpdgrflrgyrqdaydg
kdyialnedlrswtaadmaaqitkrkweavhaaeqrrvylegrcvdglrrylengketlq
rtdppkthmthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdgt
fqkwaavvvpsgeeqrytchvqheglpkpltlrwe

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >4nqxL (L:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records:
    >4nqxM (M:)
ctelklndy

  • Chain 'N':
    Sequence; same for both SEQRES and ATOM records:
    >4nqxN (N:)
ctelklndy

  • Chain 'O':
    Sequence; same for both SEQRES and ATOM records:
    >4nqxO (O:)
ctelklndy

  • Chain 'P':
    Sequence; same for both SEQRES and ATOM records:
    >4nqxP (P:)
ctelklndy

  • Chain 'Q':
    Sequence; same for both SEQRES and ATOM records:
    >4nqxQ (Q:)
ctelklndy

  • Chain 'R':
    Sequence; same for both SEQRES and ATOM records:
    >4nqxR (R:)
ctelklndy