PDB entry 4nqk

View 4nqk on RCSB PDB site
Description: Structure of an Ubiquitin complex
Deposited on 2013-11-25, released 2014-03-05
The last revision was dated 2014-05-21, with a file datestamp of 2014-05-16.
Experiment type: XRAY
Resolution: 3.7 Å
R-factor: 0.225
AEROSPACI score: 0.09 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Probable ATP-dependent RNA helicase DDX58
    Species: Homo sapiens [TaxId:9606]
    Gene: DDX58
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Probable ATP-dependent RNA helicase DDX58
    Species: Homo sapiens [TaxId:9606]
    Gene: DDX58
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Probable ATP-dependent RNA helicase DDX58
    Species: Homo sapiens [TaxId:9606]
    Gene: DDX58
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Probable ATP-dependent RNA helicase DDX58
    Species: Homo sapiens [TaxId:9606]
    Gene: DDX58
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4nqkA (A:)
gpgmtteqrrslqafqdyirktldptyilsymapwfreeevqyiqaeknnkgpmeaatlf
lkfllelqeegwfrgfldaldhagysglyeaieswdfkkiekleeyrlllkrlqpefktr
iiptdiisdlseclinqeceeilqicstkgmmagaeklvecllrsdkenwpktlklalek
ernkfselwivekgikdvetedl

    Sequence, based on observed residues (ATOM records):
    >4nqkA (A:)
mtteqrrslqafqdyirktldptyilsymapwfreeevqyiqaeknnkgpmeaatlflkf
llelqeegwfrgfldaldhagysglyeaieswdfkkiekleeyrlllkrlqpefktriip
tdiisdlseclinqeceeilqicstkgmmagaeklvecllrsdkenwpktlklalekern
kfselwiv

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4nqkB (B:)
gpgmtteqrrslqafqdyirktldptyilsymapwfreeevqyiqaeknnkgpmeaatlf
lkfllelqeegwfrgfldaldhagysglyeaieswdfkkiekleeyrlllkrlqpefktr
iiptdiisdlseclinqeceeilqicstkgmmagaeklvecllrsdkenwpktlklalek
ernkfselwivekgikdvetedl

    Sequence, based on observed residues (ATOM records):
    >4nqkB (B:)
mtteqrrslqafqdyirktldptyilsymapwfreeevqyiqaeknnkgpmeaatlflkf
llelqeegwfrgfldaldhagysglyeaieswdfkkiekleeyrlllkrlqpefktriip
tdiisdlseclinqeceeilqicstkgmmagaeklvecllrsdkenwpktlklalekern
kfselwiv

  • Chain 'C':
    Sequence, based on SEQRES records:
    >4nqkC (C:)
gpgmtteqrrslqafqdyirktldptyilsymapwfreeevqyiqaeknnkgpmeaatlf
lkfllelqeegwfrgfldaldhagysglyeaieswdfkkiekleeyrlllkrlqpefktr
iiptdiisdlseclinqeceeilqicstkgmmagaeklvecllrsdkenwpktlklalek
ernkfselwivekgikdvetedl

    Sequence, based on observed residues (ATOM records):
    >4nqkC (C:)
mtteqrrslqafqdyirktldptyilsymapwfreeevqyiqaeknnkgpmeaatlflkf
llelqeegwfrgfldaldhagysglyeaieswdfkkiekleeyrlllkrlqpefktriip
tdiisdlseclinqeceeilqicstkgmmagaeklvecllrsdkenwpktlklalekern
kfselwiv

  • Chain 'D':
    Sequence, based on SEQRES records:
    >4nqkD (D:)
gpgmtteqrrslqafqdyirktldptyilsymapwfreeevqyiqaeknnkgpmeaatlf
lkfllelqeegwfrgfldaldhagysglyeaieswdfkkiekleeyrlllkrlqpefktr
iiptdiisdlseclinqeceeilqicstkgmmagaeklvecllrsdkenwpktlklalek
ernkfselwivekgikdvetedl

    Sequence, based on observed residues (ATOM records):
    >4nqkD (D:)
mtteqrrslqafqdyirktldptyilsymapwfreeevqyiqaeknnkgpmeaatlflkf
llelqeegwfrgfldaldhagysglyeaieswdfkkiekleeyrlllkrlqpefktriip
tdiisdlseclinqeceeilqicstkgmmagaeklvecllrsdkenwpktlklalekern
kfselwiv

  • Chain 'E':
    Sequence, based on SEQRES records:
    >4nqkE (E:)
gpgmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtls
dyniqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records):
    >4nqkE (E:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlr

  • Chain 'F':
    Sequence, based on SEQRES records:
    >4nqkF (F:)
gpgmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtls
dyniqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records):
    >4nqkF (F:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrl

  • Chain 'G':
    Sequence, based on SEQRES records:
    >4nqkG (G:)
gpgmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtls
dyniqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records):
    >4nqkG (G:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvl

  • Chain 'H':
    Sequence, based on SEQRES records:
    >4nqkH (H:)
gpgmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtls
dyniqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records):
    >4nqkH (H:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrg

  • Chain 'I':
    Sequence, based on SEQRES records:
    >4nqkI (I:)
gpgmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtls
dyniqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records):
    >4nqkI (I:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvl

  • Chain 'J':
    Sequence, based on SEQRES records:
    >4nqkJ (J:)
gpgmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtls
dyniqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records):
    >4nqkJ (J:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrl