PDB entry 4nqc
View 4nqc on RCSB PDB site
Description: Crystal structure of TCR-MHC ternary complex and covalently bound 5-(2-oxopropylideneamino)-6-D-ribitylaminouracil
Class: immune system
Keywords: MR1, T-Cell receptor, immune receptor complex, Ig-fold, protein binding, Schiff base, membrane, IMMUNE SYSTEM
Deposited on
2013-11-25, released
2014-04-16
The last revision prior to the SCOPe 2.04 freeze date was dated
2014-05-28, with a file datestamp of
2014-05-23.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.168
AEROSPACI score: 0.29
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Major histocompatibility complex class I-related gene protein
Species: Homo sapiens [TaxId:9606]
Gene: MR1
Database cross-references and differences (RAF-indexed):
- Uniprot Q95460 (1-End)
- expression tag (0)
- engineered mutation (261)
Domains in SCOPe 2.04: d4nqca1, d4nqca2 - Chain 'B':
Compound: Beta-2-microglobulin
Species: Homo sapiens [TaxId:9606]
Gene: B2M, Beta 2 microglobulin, CDABP0092, HDCMA22P
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d4nqcb_ - Chain 'C':
Compound: Major histocompatibility complex class I-related gene protein
Species: Homo sapiens [TaxId:9606]
Gene: MR1
Database cross-references and differences (RAF-indexed):
- Uniprot Q95460 (1-End)
- expression tag (0)
- engineered mutation (261)
- Chain 'D':
Compound: TcR alpha chain
Species: Homo sapiens [TaxId:9606]
Gene: TCR-alpha
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d4nqcd1, d4nqcd2 - Chain 'E':
Compound: TCR beta chain
Species: Homo sapiens [TaxId:9606]
Gene: TCR-beta
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d4nqce1, d4nqce2 - Chain 'F':
Compound: Beta-2-microglobulin
Species: Homo sapiens [TaxId:9606]
Gene: B2M, Beta 2 microglobulin, CDABP0092, HDCMA22P
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d4nqcf_ - Chain 'G':
Compound: TcR alpha chain
Species: Homo sapiens [TaxId:9606]
Gene: TCR-alpha
Database cross-references and differences (RAF-indexed):
- Chain 'H':
Compound: TCR beta chain
Species: Homo sapiens [TaxId:9606]
Gene: TCR-beta
Database cross-references and differences (RAF-indexed):
- Heterogens: 2LJ, NA, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4nqcA (A:)
mrthslryfrlgvsdpihgvpefisvgyvdshpittydsvtrqkeprapwmaenlapdhw
erytqllrgwqqmfkvelkrlqrhynhsgshtyqrmigcelledgsttgflqyaydgqdf
lifnkdtlswlavdnvahtikqaweanqhellyqknwleeeciawlkrfleygkdtlqrt
epplvrvnrketfpgvtalfckahgfyppeiymtwmkngeeivqeidygdilpsgdgtyq
awasieldpqssnlyschvehsgvhmvlqvp
Sequence, based on observed residues (ATOM records): (download)
>4nqcA (A:)
mrthslryfrlgvsdpihgvpefisvgyvdshpittydsvtrqkeprapwmaenlapdhw
erytqllrgwqqmfkvelkrlqrhynhsgshtyqrmigcelledgsttgflqyaydgqdf
lifnkdtlswlavdnvahtikqaweanqhellyqknwleeeciawlkrfleygkdtlqrt
epplvrvnrlfckahgfyppeiymtwmkngeeivqeidygdilpsgdgtyqawasisnly
schvehsgvhmvlqv
- Chain 'B':
Sequence, based on SEQRES records: (download)
>4nqcB (B:)
iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
Sequence, based on observed residues (ATOM records): (download)
>4nqcB (B:)
iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
sfyllyyteftptekdeyacrvnhvtlsqpkivkwd
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence, based on SEQRES records: (download)
>4nqcD (D:)
gqnidqptemtategaivqinctyqtsgfnglfwyqqhageaptflsynvldgleekgrf
ssflsrskgysylllkelqmkdsasylcavkdsnyqliwgagtkliikpdiqnpdpavyq
lrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsnksdf
acanafnnsiipedtffpspess
Sequence, based on observed residues (ATOM records): (download)
>4nqcD (D:)
qnidqptemtategaivqinctyqtsgfnglfwyqqhageaptflsynvldgleekgrfs
sflsrskgysylllkelqmkdsasylcavkdsnyqliwgagtkliikpdiqnpdpavyql
rvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsnacanafnnsiipe
dtffp
- Chain 'E':
Sequence, based on SEQRES records: (download)
>4nqcE (E:)
nagvtqtpkfqvlktgqsmtlqcaqdmnhnsmywyrqdpgmglrliyysasegttdkgev
pngynvsrlnkrefslrlesaapsqtsvyfcassvwtgegsgelffgegsrltvledlkn
vfppevavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplke
qpalndsryalssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaea
wgrad
Sequence, based on observed residues (ATOM records): (download)
>4nqcE (E:)
gvtqtpkfqvlktgqsmtlqcaqdmnhnsmywyrqdpgmglrliyysasegttdkgevpn
gynvsrlnkrefslrlesaapsqtsvyfcassvwtgegsgelffgegsrltvledlknvf
ppevavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplkeqp
alndsryalssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaeawg
- Chain 'F':
Sequence, based on SEQRES records: (download)
>4nqcF (F:)
iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
Sequence, based on observed residues (ATOM records): (download)
>4nqcF (F:)
iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
sfyllyyteftptekdeyacrvnhvtlsqpkivkwdr
- Chain 'G':
No sequence available.
- Chain 'H':
No sequence available.