PDB entry 4npm

View 4npm on RCSB PDB site
Description: Crystal structure of Zebrafish ALKBH5 in complex with succinic acid
Deposited on 2013-11-21, released 2014-02-19
The last revision was dated 2014-04-02, with a file datestamp of 2014-03-28.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.173
AEROSPACI score: 0.45 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: RNA demethylase ALKBH5
    Species: Danio rerio [TaxId:7955]
    Gene: alkbh5
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: RNA demethylase ALKBH5
    Species: Danio rerio [TaxId:7955]
    Gene: alkbh5
    Database cross-references and differences (RAF-indexed):
  • Heterogens: MN, SIN, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4npmA (A:)
deseyeerrdaearrvksgikqasiftleecarieakidevvakadkglyrehtvdrapl
rnkyffgegytygaqlekrgpgqerlyskgevddipdwvhelvidrlvthgvipegfvns
avindyqpggcivshvdpihiferpivsvsffsdsalcfgckflfkpirvsepvlhlpvr
rgsvtvlsgyaaddithcirpqdikerraviilrktradaprldsnslspsivspkrrhi
lkakrshrka

    Sequence, based on observed residues (ATOM records):
    >4npmA (A:)
eyeerrdaearrvksgikqasiftleecarieakidevvakadkglyrehtvdraplrnk
yffgegytqerlyskgevddipdwvhelvidrlvthgvipegfvnsavindyqpggcivs
hvdpihiferpivsvsffsdsalcfgckflfkpirvsepvlhlpvrrgsvtvlsgyaadd
ithcirpqdikerraviilrktradaprld

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4npmB (B:)
deseyeerrdaearrvksgikqasiftleecarieakidevvakadkglyrehtvdrapl
rnkyffgegytygaqlekrgpgqerlyskgevddipdwvhelvidrlvthgvipegfvns
avindyqpggcivshvdpihiferpivsvsffsdsalcfgckflfkpirvsepvlhlpvr
rgsvtvlsgyaaddithcirpqdikerraviilrktradaprldsnslspsivspkrrhi
lkakrshrka

    Sequence, based on observed residues (ATOM records):
    >4npmB (B:)
rdaearrvksgikqasiftleecarieakidevvakadkglyrehtvdraplrnkyffge
gytqerlyskgevddipdwvhelvidrlvthgvipegfvnsavindyqpggcivshvdpi
hiferpivsvsffsdsalcfgckflfkpirvsepvlhlpvrrgsvtvlsgyaaddithci
rpqdikerraviilrktradaprl