PDB entry 4nkh

View 4nkh on RCSB PDB site
Description: Crystal structure of SspH1 LRR domain
Deposited on 2013-11-12, released 2013-12-11
The last revision was dated 2014-01-22, with a file datestamp of 2014-01-17.
Experiment type: XRAY
Resolution: 2.75 Å
R-factor: 0.245
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: E3 ubiquitin-protein ligase sspH1
    Species: Salmonella enterica subsp. enterica serovar Typhimurium [TaxId:588858]
    Gene: sspH1, STM14_1483
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: E3 ubiquitin-protein ligase sspH1
    Species: Salmonella enterica subsp. enterica serovar Typhimurium [TaxId:588858]
    Gene: sspH1, STM14_1483
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: E3 ubiquitin-protein ligase sspH1
    Species: Salmonella enterica subsp. enterica serovar Typhimurium [TaxId:588858]
    Gene: sspH1, STM14_1483
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: E3 ubiquitin-protein ligase sspH1
    Species: Salmonella enterica subsp. enterica serovar Typhimurium [TaxId:588858]
    Gene: sspH1, STM14_1483
    Database cross-references and differences (RAF-indexed):
    • Uniprot D0ZVG2 (1-End)
      • expression tag (0)
  • Chain 'E':
    Compound: E3 ubiquitin-protein ligase sspH1
    Species: Salmonella enterica subsp. enterica serovar Typhimurium [TaxId:588858]
    Gene: sspH1, STM14_1483
    Database cross-references and differences (RAF-indexed):
    • Uniprot D0ZVG2 (1-238)
      • expression tag (0)
  • Chain 'F':
    Compound: E3 ubiquitin-protein ligase sspH1
    Species: Salmonella enterica subsp. enterica serovar Typhimurium [TaxId:588858]
    Gene: sspH1, STM14_1483
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4nkhA (A:)
gaeydavwskwerdapagespgraavvqemrdclnngnpvlnvgasglttlpdrlpphit
tlvipdnnltslpelpeglrelevsgnlqltslpslpqglqklwaynnwlaslptlppgl
gdlavsnnqltslpemppalrelrvsgnnltslpalpsglqklwaynnrltslpemspgl
qeldvshnqltrlpqsltglssaarvyldgnplsvrtlqalrdiighsgirihfdmagp

    Sequence, based on observed residues (ATOM records):
    >4nkhA (A:)
eydavwskwerdapagespgraavvqemrdclnngnpvlnvgasglttlpdrlpphittl
vipdnnltslpelpeglrelevsgnlqltslpslpqglqklwaynnwlaslptlppglgd
lavsnnqltslpemppalrelrvsgnnltslpalpsglqklwaynnrltslpemspglqe
ldvshnqltrlpqsltglssaarvyldgnplsvrtlqalrdiighsgirihfdmag

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4nkhB (B:)
gaeydavwskwerdapagespgraavvqemrdclnngnpvlnvgasglttlpdrlpphit
tlvipdnnltslpelpeglrelevsgnlqltslpslpqglqklwaynnwlaslptlppgl
gdlavsnnqltslpemppalrelrvsgnnltslpalpsglqklwaynnrltslpemspgl
qeldvshnqltrlpqsltglssaarvyldgnplsvrtlqalrdiighsgirihfdmagp

    Sequence, based on observed residues (ATOM records):
    >4nkhB (B:)
eydavwskwerdapagespgraavvqemrdclnngnpvlnvgasglttlpdrlpphittl
vipdnnltslpelpeglrelevsgnlqltslpslpqglqklwaynnwlaslptlppglgd
lavsnnqltslpemppalrelrvsgnnltslpalpsglqklwaynnrltslpemspglqe
ldvshnqltrlpqsltglssaarvyldgnplsvrtlqalrdiighsgirihfdmagp

  • Chain 'C':
    Sequence, based on SEQRES records:
    >4nkhC (C:)
gaeydavwskwerdapagespgraavvqemrdclnngnpvlnvgasglttlpdrlpphit
tlvipdnnltslpelpeglrelevsgnlqltslpslpqglqklwaynnwlaslptlppgl
gdlavsnnqltslpemppalrelrvsgnnltslpalpsglqklwaynnrltslpemspgl
qeldvshnqltrlpqsltglssaarvyldgnplsvrtlqalrdiighsgirihfdmagp

    Sequence, based on observed residues (ATOM records):
    >4nkhC (C:)
aeydavwskwerdapagespgraavvqemrdclnngnpvlnvgasglttlpdrlpphitt
lvipdnnltslpelpeglrelevsgnlqltslpslpqglqklwaynnwlaslptlppglg
dlavsnnqltslpemppalrelrvsgnnltslpalpsglqklwaynnrltslpemspglq
eldvshnqltrlpqsltglssaarvyldgnplsvrtlqalrdiighsgirihf

  • Chain 'D':
    Sequence, based on SEQRES records:
    >4nkhD (D:)
gaeydavwskwerdapagespgraavvqemrdclnngnpvlnvgasglttlpdrlpphit
tlvipdnnltslpelpeglrelevsgnlqltslpslpqglqklwaynnwlaslptlppgl
gdlavsnnqltslpemppalrelrvsgnnltslpalpsglqklwaynnrltslpemspgl
qeldvshnqltrlpqsltglssaarvyldgnplsvrtlqalrdiighsgirihfdmagp

    Sequence, based on observed residues (ATOM records):
    >4nkhD (D:)
gaeydavwskwerdapagespgraavvqemrdclnngnpvlnvgasglttlpdrlpphit
tlvipdnnltslpelpeglrelevsgnlqltslpslpqglqklwaynnwlaslptlppgl
gdlavsnnqltslpemppalrelrvsgnnltslpalpsglqklwaynnrltslpemspgl
qeldvshnqltrlpqsltglssaarvyldgnplsvrtlqalrdiighsgirihfdm

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >4nkhE (E:)
gaeydavwskwerdapagespgraavvqemrdclnngnpvlnvgasglttlpdrlpphit
tlvipdnnltslpelpeglrelevsgnlqltslpslpqglqklwaynnwlaslptlppgl
gdlavsnnqltslpemppalrelrvsgnnltslpalpsglqklwaynnrltslpemspgl
qeldvshnqltrlpqsltglssaarvyldgnplsvrtlqalrdiighsgirihfdmagp

  • Chain 'F':
    Sequence, based on SEQRES records:
    >4nkhF (F:)
gaeydavwskwerdapagespgraavvqemrdclnngnpvlnvgasglttlpdrlpphit
tlvipdnnltslpelpeglrelevsgnlqltslpslpqglqklwaynnwlaslptlppgl
gdlavsnnqltslpemppalrelrvsgnnltslpalpsglqklwaynnrltslpemspgl
qeldvshnqltrlpqsltglssaarvyldgnplsvrtlqalrdiighsgirihfdmagp

    Sequence, based on observed residues (ATOM records):
    >4nkhF (F:)
eydavwskwerdapagespgraavvqemrdclnngnpvlnvgasglttlpdrlpphittl
vipdnnltslpelpeglrelevsgnlqltslpslpqglqklwaynnwlaslptlppglgd
lavsnnqltslpemppalrelrvsgnnltslpalpsglqklwaynnrltslpemspglqe
ldvshnqltrlpqsltglssaarvyldgnplsvrtlqalrdiighsgirihfdma