PDB entry 4ni8

View 4ni8 on RCSB PDB site
Description: Crystal structure of 5-carboxyvanillate decarboxylase LigW from Sphingomonas paucimobilis complexed with Mn and 5-methoxyisophtalic acid
Deposited on 2013-11-05, released 2014-11-26
The last revision was dated 2014-11-26, with a file datestamp of 2014-11-21.
Experiment type: XRAY
Resolution: 1.64 Å
R-factor: 0.15
AEROSPACI score: 0.53 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 5-carboxyvanillate decarboxylase
    Species: SPHINGOMONAS PAUCIMOBILIS [TaxId:13689]
    Gene: ligW
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8RJ47 (2-334)
      • expression tag (0-1)
  • Chain 'B':
    Compound: 5-carboxyvanillate decarboxylase
    Species: SPHINGOMONAS PAUCIMOBILIS [TaxId:13689]
    Gene: ligW
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8RJ47 (2-334)
      • expression tag (0-1)
  • Chain 'C':
    Compound: 5-carboxyvanillate decarboxylase
    Species: SPHINGOMONAS PAUCIMOBILIS [TaxId:13689]
    Gene: ligW
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8RJ47 (2-334)
      • expression tag (0-1)
  • Chain 'D':
    Compound: 5-carboxyvanillate decarboxylase
    Species: SPHINGOMONAS PAUCIMOBILIS [TaxId:13689]
    Gene: ligW
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8RJ47 (2-334)
      • expression tag (0-1)
  • Chain 'E':
    Compound: 5-carboxyvanillate decarboxylase
    Species: SPHINGOMONAS PAUCIMOBILIS [TaxId:13689]
    Gene: ligW
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8RJ47 (2-334)
      • expression tag (0-1)
  • Chain 'F':
    Compound: 5-carboxyvanillate decarboxylase
    Species: SPHINGOMONAS PAUCIMOBILIS [TaxId:13689]
    Gene: ligW
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8RJ47 (2-334)
      • expression tag (0-1)
  • Chain 'G':
    Compound: 5-carboxyvanillate decarboxylase
    Species: SPHINGOMONAS PAUCIMOBILIS [TaxId:13689]
    Gene: ligW
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8RJ47 (2-334)
      • expression tag (0-1)
  • Chain 'H':
    Compound: 5-carboxyvanillate decarboxylase
    Species: SPHINGOMONAS PAUCIMOBILIS [TaxId:13689]
    Gene: ligW
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8RJ47 (2-334)
      • expression tag (0-1)
  • Heterogens: MN, 1WB, EDO, GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >4ni8A (A:)
slrliateeavtfqpvvdalrahsrtddasldmilvrdvygdeparpamigrlsdvtger
laemdsngvdmhllsltapgvqmfdaetgtrlariandlmaqtvaanptrfaglgtfapq
dpasaareiervatqlrlnglvinshtndlyyddpffhpvfeaieasglalyihprapsk
qidrafrdygmnsaiwgygietstnavrmilsglfdrfprlkivlghmgeaipfwlwrld
ymhgnattfggapklklkpseyfrrnfaittsgveshaalrysievlgpenvmwaidypy
qpmapavqfirtapipedvkamvaggnaarifrit

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >4ni8B (B:)
slrliateeavtfqpvvdalrahsrtddasldmilvrdvygdeparpamigrlsdvtger
laemdsngvdmhllsltapgvqmfdaetgtrlariandlmaqtvaanptrfaglgtfapq
dpasaareiervatqlrlnglvinshtndlyyddpffhpvfeaieasglalyihprapsk
qidrafrdygmnsaiwgygietstnavrmilsglfdrfprlkivlghmgeaipfwlwrld
ymhgnattfggapklklkpseyfrrnfaittsgveshaalrysievlgpenvmwaidypy
qpmapavqfirtapipedvkamvaggnaarifrit

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >4ni8C (C:)
slrliateeavtfqpvvdalrahsrtddasldmilvrdvygdeparpamigrlsdvtger
laemdsngvdmhllsltapgvqmfdaetgtrlariandlmaqtvaanptrfaglgtfapq
dpasaareiervatqlrlnglvinshtndlyyddpffhpvfeaieasglalyihprapsk
qidrafrdygmnsaiwgygietstnavrmilsglfdrfprlkivlghmgeaipfwlwrld
ymhgnattfggapklklkpseyfrrnfaittsgveshaalrysievlgpenvmwaidypy
qpmapavqfirtapipedvkamvaggnaarifrit

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >4ni8D (D:)
slrliateeavtfqpvvdalrahsrtddasldmilvrdvygdeparpamigrlsdvtger
laemdsngvdmhllsltapgvqmfdaetgtrlariandlmaqtvaanptrfaglgtfapq
dpasaareiervatqlrlnglvinshtndlyyddpffhpvfeaieasglalyihprapsk
qidrafrdygmnsaiwgygietstnavrmilsglfdrfprlkivlghmgeaipfwlwrld
ymhgnattfggapklklkpseyfrrnfaittsgveshaalrysievlgpenvmwaidypy
qpmapavqfirtapipedvkamvaggnaarifrit

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >4ni8E (E:)
slrliateeavtfqpvvdalrahsrtddasldmilvrdvygdeparpamigrlsdvtger
laemdsngvdmhllsltapgvqmfdaetgtrlariandlmaqtvaanptrfaglgtfapq
dpasaareiervatqlrlnglvinshtndlyyddpffhpvfeaieasglalyihprapsk
qidrafrdygmnsaiwgygietstnavrmilsglfdrfprlkivlghmgeaipfwlwrld
ymhgnattfggapklklkpseyfrrnfaittsgveshaalrysievlgpenvmwaidypy
qpmapavqfirtapipedvkamvaggnaarifrit

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >4ni8F (F:)
slrliateeavtfqpvvdalrahsrtddasldmilvrdvygdeparpamigrlsdvtger
laemdsngvdmhllsltapgvqmfdaetgtrlariandlmaqtvaanptrfaglgtfapq
dpasaareiervatqlrlnglvinshtndlyyddpffhpvfeaieasglalyihprapsk
qidrafrdygmnsaiwgygietstnavrmilsglfdrfprlkivlghmgeaipfwlwrld
ymhgnattfggapklklkpseyfrrnfaittsgveshaalrysievlgpenvmwaidypy
qpmapavqfirtapipedvkamvaggnaarifrit

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records:
    >4ni8G (G:)
slrliateeavtfqpvvdalrahsrtddasldmilvrdvygdeparpamigrlsdvtger
laemdsngvdmhllsltapgvqmfdaetgtrlariandlmaqtvaanptrfaglgtfapq
dpasaareiervatqlrlnglvinshtndlyyddpffhpvfeaieasglalyihprapsk
qidrafrdygmnsaiwgygietstnavrmilsglfdrfprlkivlghmgeaipfwlwrld
ymhgnattfggapklklkpseyfrrnfaittsgveshaalrysievlgpenvmwaidypy
qpmapavqfirtapipedvkamvaggnaarifrit

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >4ni8H (H:)
slrliateeavtfqpvvdalrahsrtddasldmilvrdvygdeparpamigrlsdvtger
laemdsngvdmhllsltapgvqmfdaetgtrlariandlmaqtvaanptrfaglgtfapq
dpasaareiervatqlrlnglvinshtndlyyddpffhpvfeaieasglalyihprapsk
qidrafrdygmnsaiwgygietstnavrmilsglfdrfprlkivlghmgeaipfwlwrld
ymhgnattfggapklklkpseyfrrnfaittsgveshaalrysievlgpenvmwaidypy
qpmapavqfirtapipedvkamvaggnaarifrit