PDB entry 4nhy

View 4nhy on RCSB PDB site
Description: crystal structure of human ogfod1, 2-oxoglutarate and iron-dependent oxygenase domain containing 1, in complex with pyridine-2,4- dicarboxylic acid (2,4-pdca)
Deposited on 2013-11-05, released 2014-11-19
The last revision was dated 2019-07-17, with a file datestamp of 2019-07-12.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 1
    Species: Homo sapiens [TaxId:9606]
    Gene: OGFOD1, KIAA1612, TPA1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 1
    Species: Homo sapiens [TaxId:9606]
    Gene: OGFOD1, KIAA1612, TPA1
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 1
    Species: Homo sapiens [TaxId:9606]
    Gene: OGFOD1, KIAA1612, TPA1
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 1
    Species: Homo sapiens [TaxId:9606]
    Gene: OGFOD1, KIAA1612, TPA1
    Database cross-references and differences (RAF-indexed):
  • Heterogens: MN, GOL, PD2, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4nhyA (A:)
mgsshhhhhhssglvprgshmngkrpaepgparvgkkgkkevmaefsdavteetlkkqva
eawsrrtpfshevivmdmdpflhcvipnfiqsqdfleglqkelmnldfhekyndlykfqq
sddlkkrrephistlrkilfedfrswlsdiskidlestidmscakyeftdallchddele
grriafilylvppwdrsmggtldlysidehfqpkqivkslipswnklvffevspvsfhqv
sevlseeksrlsisgwfhgpsltrppnyfeppiprsphipqdheilydwinptyldmdyq
vqiqeefeesseillkeflkpekftkvcealehghvewssrgppnkrfyekaeesklpei
lkecmklfrsealflllsnftglklhflapseedemndkkeaettditeegtshsppepe
nnqmaisnnsqqsneqtdpepeenetkkessvpmcqgelrhwktghytlihdhskaefal
dlilycgcegwepeyggftsyiakgedeelltvnpesnslalvyrdretlkfvkhinhrs
leqkktfpnrtgfwdfsfiyye

    Sequence, based on observed residues (ATOM records):
    >4nhyA (A:)
aefsdavteetlkkqvaeawsrrtpfshevivmdmdpflhcvipnfiqsqdfleglqkel
mnldfhekyndlykfqqsddlkkrrephistlrkilfedfrswlsdiskidlestidmsc
akyeftdallchddelegrriafilylvppwdrsmggtldlysidehfqpkqivkslips
wnklvffevspvsfhqvsevlseeksrlsisgwfhgpsltrppnyfeppiprsphipqdh
eilydwinptyldmdyqvqiqeefeesseillkeflkpekftkvcealehghvewssrgp
pnkrfyekaeesklpeilkecmklfrsealflllsnftglklhflapsssvpmcqgelrh
wktghytlihdhskaefaldlilycgcegwepeyggftsyiakgedeelltvnpesnsla
lvyrdretlkfvkhinhrsleqkktfpnrtgfwdfsfiyye

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4nhyB (B:)
mgsshhhhhhssglvprgshmngkrpaepgparvgkkgkkevmaefsdavteetlkkqva
eawsrrtpfshevivmdmdpflhcvipnfiqsqdfleglqkelmnldfhekyndlykfqq
sddlkkrrephistlrkilfedfrswlsdiskidlestidmscakyeftdallchddele
grriafilylvppwdrsmggtldlysidehfqpkqivkslipswnklvffevspvsfhqv
sevlseeksrlsisgwfhgpsltrppnyfeppiprsphipqdheilydwinptyldmdyq
vqiqeefeesseillkeflkpekftkvcealehghvewssrgppnkrfyekaeesklpei
lkecmklfrsealflllsnftglklhflapseedemndkkeaettditeegtshsppepe
nnqmaisnnsqqsneqtdpepeenetkkessvpmcqgelrhwktghytlihdhskaefal
dlilycgcegwepeyggftsyiakgedeelltvnpesnslalvyrdretlkfvkhinhrs
leqkktfpnrtgfwdfsfiyye

    Sequence, based on observed residues (ATOM records):
    >4nhyB (B:)
aefsdavteetlkkqvaeawsrrtpfshevivmdmdpflhcvipnfiqsqdfleglqkel
mnldfhekyndlykfqqsddlkkrrephistlrkilfedfrswlsdiskidlestidmsc
akyeftdallchddelegrriafilylvppwdrsmggtldlysidehfqpkqivkslips
wnklvffevspvsfhqvsevlseeksrlsisgwfhgpsltrppnyfeppiprsphipqdh
eilydwinptyldmdyqvqiqeefeesseillkeflkpekftkvcealehghvewssrgp
pnkrfyekaeesklpeilkecmklfrsealflllsnftglklhflapsssvpmcqgelrh
wktghytlihdhskaefaldlilycgcegwepeyggftsyiakgedeelltvnpesnsla
lvyrdretlkfvkhinhrsleqkktfpnrtgfwdfsfiyye

  • Chain 'C':
    Sequence, based on SEQRES records:
    >4nhyC (C:)
mgsshhhhhhssglvprgshmngkrpaepgparvgkkgkkevmaefsdavteetlkkqva
eawsrrtpfshevivmdmdpflhcvipnfiqsqdfleglqkelmnldfhekyndlykfqq
sddlkkrrephistlrkilfedfrswlsdiskidlestidmscakyeftdallchddele
grriafilylvppwdrsmggtldlysidehfqpkqivkslipswnklvffevspvsfhqv
sevlseeksrlsisgwfhgpsltrppnyfeppiprsphipqdheilydwinptyldmdyq
vqiqeefeesseillkeflkpekftkvcealehghvewssrgppnkrfyekaeesklpei
lkecmklfrsealflllsnftglklhflapseedemndkkeaettditeegtshsppepe
nnqmaisnnsqqsneqtdpepeenetkkessvpmcqgelrhwktghytlihdhskaefal
dlilycgcegwepeyggftsyiakgedeelltvnpesnslalvyrdretlkfvkhinhrs
leqkktfpnrtgfwdfsfiyye

    Sequence, based on observed residues (ATOM records):
    >4nhyC (C:)
aefsdavteetlkkqvaeawsrrtpfshevivmdmdpflhcvipnfiqsqdfleglqkel
mnldfhekyndlykfqqsddlkkrrephistlrkilfedfrswlsdiskidlestidmsc
akyeftdallchddelegrriafilylvppwdrsmggtldlysidehfqpkqivkslips
wnklvffevspvsfhqvsevlseeksrlsisgwfhgpsltrppnyfeppiprsphipqdh
eilydwinptyldmdyqvqiqeefeesseillkeflkpekftkvcealehghvewssrgp
pnkrfyekaeesklpeilkecmklfrsealflllsnftglklhflapssvpmcqgelrhw
ktghytlihkaefaldlilycgcegwepeyggftsyiakgedeelltvnpesnslalvyr
dretlkfvkhinhrsleqkktfpnrtgfwdfsfiyye

  • Chain 'D':
    Sequence, based on SEQRES records:
    >4nhyD (D:)
mgsshhhhhhssglvprgshmngkrpaepgparvgkkgkkevmaefsdavteetlkkqva
eawsrrtpfshevivmdmdpflhcvipnfiqsqdfleglqkelmnldfhekyndlykfqq
sddlkkrrephistlrkilfedfrswlsdiskidlestidmscakyeftdallchddele
grriafilylvppwdrsmggtldlysidehfqpkqivkslipswnklvffevspvsfhqv
sevlseeksrlsisgwfhgpsltrppnyfeppiprsphipqdheilydwinptyldmdyq
vqiqeefeesseillkeflkpekftkvcealehghvewssrgppnkrfyekaeesklpei
lkecmklfrsealflllsnftglklhflapseedemndkkeaettditeegtshsppepe
nnqmaisnnsqqsneqtdpepeenetkkessvpmcqgelrhwktghytlihdhskaefal
dlilycgcegwepeyggftsyiakgedeelltvnpesnslalvyrdretlkfvkhinhrs
leqkktfpnrtgfwdfsfiyye

    Sequence, based on observed residues (ATOM records):
    >4nhyD (D:)
aefsdavteetlkkqvaeawsrrtpfshevivmdmdpflhcvipnfiqsqdfleglqkel
mnldfhekyndlykfqqsddlkkrrephistlrkilfedfrswlsdiskidlestidmsc
akyeftdallchddelegrriafilylvppwdrsmggtldlysidehfqpkqivkslips
wnklvffevspvsfhqvsevlseeksrlsisgwfhgpsltrppnyfeppiprsphipqdh
eilydwinptyldmdyqvqiqeefeesseillkeflkpekftkvcealehghvewssrgp
pnkrfyekaeesklpeilkecmklfrsealflllsnftglklhflapsssvpmcqgelrh
wktghytlihdhskaefaldlilycgcegwepeyggftsyiakgedeelltvnpesnsla
lvyrdretlkfvkhinhrsleqkktfpnrtgfwdfsfiyye