PDB entry 4nhb

View 4nhb on RCSB PDB site
Description: Crystal structure of a TRAP periplasmic solute binding protein from Desulfovibrio desulfuricans (Ddes_1525), Target EFI-510107, with bound sn-glycerol-3-phosphate
Class: transport protein
Keywords: TRAP periplasmic solute binding family, Enzyme Function Initiative, EFI, structural genomics, TRANSPORT PROTEIN
Deposited on 2013-11-04, released 2013-11-20
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-11-15, with a file datestamp of 2017-11-10.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: TRAP dicarboxylate transporter-DctP subunit
    Species: Desulfovibrio desulfuricans subsp. desulfuricans [TaxId:525146]
    Gene: Ddes_1525
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4nhba_
  • Chain 'B':
    Compound: TRAP dicarboxylate transporter-DctP subunit
    Species: Desulfovibrio desulfuricans subsp. desulfuricans [TaxId:525146]
    Gene: Ddes_1525
    Database cross-references and differences (RAF-indexed):
    • Uniprot B8J100 (Start-333)
      • expression tag (333-338)
      • expression tag (334-338)
    Domains in SCOPe 2.08: d4nhbb1, d4nhbb2
  • Heterogens: IOD, G3P, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4nhbA (A:)
mkrlvalfvavglicglalstaptagaatvikmagmkpegepetigmhlfgkylkelsng
kyevqvfpnsqlgkedayiaatrkgiiqmcatgtqtsalhpamamletpmlfdnldharr
amegktfdlinegfteksglrtlnafplgfrhfyskkpikdvkdlegmrmrvpniplytn
fakecgisgqpmpfaevpgaldqgvidggdspladivslkmyeitpeislsghilvihsl
yindkffkslpeqdqkwieeaakrsaddvwamvadgdekakatilankgnihepskelhe
hlvnagkrswklfydtvpnaqaildsadsyreskaenlyfq

    Sequence, based on observed residues (ATOM records): (download) 
    >4nhbA (A:)
tvikmagmkpegepetigmhlfgkylkelsngkyevqvfpnsqlgkedayiaatrkgiiq
mcatgtqtsalhpamamletpmlfdnldharramegktfdlinegfteksglrtlnafpl
gfrhfyskkpmrmrvpniplytnfakecgisgqpmpfaevpgaldqgvidggdspladiv
slkmyeitpeislsghilvihslyindkffkslpeqdqkwieeaakrsaddvwamvadgd
ekakatilankgnihepskelhehlvnagkrswklfydtvpnaqaildsadsyr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4nhbB (B:)
mkrlvalfvavglicglalstaptagaatvikmagmkpegepetigmhlfgkylkelsng
kyevqvfpnsqlgkedayiaatrkgiiqmcatgtqtsalhpamamletpmlfdnldharr
amegktfdlinegfteksglrtlnafplgfrhfyskkpikdvkdlegmrmrvpniplytn
fakecgisgqpmpfaevpgaldqgvidggdspladivslkmyeitpeislsghilvihsl
yindkffkslpeqdqkwieeaakrsaddvwamvadgdekakatilankgnihepskelhe
hlvnagkrswklfydtvpnaqaildsadsyreskaenlyfq

    Sequence, based on observed residues (ATOM records): (download) 
    >4nhbB (B:)
tvikmagmkpegepetigmhlfgkylkelsngkyevqvfpnsqlgkedayiaatrkgiiq
mcatgtqtsalhpamamletpmlfdnldharramegktfdlinegfteksglrtlnafpl
gfrhfyskkpikdvkdlegmrmrvpniplytnfakecgisgqpmpfaevpgaldqgvidg
gdspladivslkmyeitpeislsghilvihslyindkffkslpeqdqkwieeaakrsadd
vwamvadgdekakatilankgnihepskelhehlvnagkrswklfydtvpnaqaildsad
syreskaenly