PDB entry 4nfx

View 4nfx on RCSB PDB site
Description: Structure and atypical hydrolysis mechanism of the Nudix hydrolase Orf153 (YmfB) from Escherichia coli
Class: hydrolase
Keywords: Nudix hydrolase; YmfB; Nucleoside triphosphatase; Metal ions-based catalysis, Nudix motif, phosphatase, HYDROLASE
Deposited on 2013-11-01, released 2014-05-14
The last revision prior to the SCOPe 2.08 freeze date was dated 2015-03-11, with a file datestamp of 2015-03-06.
Experiment type: XRAY
Resolution: 2.69 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative Nudix hydrolase ymfB
    Species: Escherichia coli [TaxId:885275]
    Gene: i14_1356
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4nfxa_
  • Chain 'B':
    Compound: Putative Nudix hydrolase ymfB
    Species: Escherichia coli [TaxId:885275]
    Gene: i14_1356
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4nfxb_
  • Chain 'C':
    Compound: Putative Nudix hydrolase ymfB
    Species: Escherichia coli [TaxId:885275]
    Gene: i14_1356
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4nfxc_
  • Chain 'D':
    Compound: Putative Nudix hydrolase ymfB
    Species: Escherichia coli [TaxId:885275]
    Gene: i14_1356
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4nfxd_
  • Chain 'E':
    Compound: Putative Nudix hydrolase ymfB
    Species: Escherichia coli [TaxId:885275]
    Gene: i14_1356
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4nfxe_
  • Chain 'F':
    Compound: Putative Nudix hydrolase ymfB
    Species: Escherichia coli [TaxId:885275]
    Gene: i14_1356
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4nfxf_
  • Chain 'G':
    Compound: Putative Nudix hydrolase ymfB
    Species: Escherichia coli [TaxId:885275]
    Gene: i14_1356
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4nfxg_
  • Chain 'H':
    Compound: Putative Nudix hydrolase ymfB
    Species: Escherichia coli [TaxId:885275]
    Gene: i14_1356
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4nfxh_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4nfxA (A:)
mfkphvtvacvvhaegkflvveetingkalwnqpaghleadetlveaaarelweetgisa
qpqhfirmhqwiapdktpflrflfaieleqicptqphdsdidccrwvsaeeilqasnlrs
plvaesircyqsgqryplemigdfnwpftkgvi

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4nfxB (B:)
mfkphvtvacvvhaegkflvveetingkalwnqpaghleadetlveaaarelweetgisa
qpqhfirmhqwiapdktpflrflfaieleqicptqphdsdidccrwvsaeeilqasnlrs
plvaesircyqsgqryplemigdfnwpftkgvi

    Sequence, based on observed residues (ATOM records): (download) 
    >4nfxB (B:)
mfkphvtvacvvhaegkflvveetingkalwnqpaghleadetlveaaarelweetgisa
qpqhfirmhqwiapdktpflrflfaieleqicptqphdsdidccrwvsaeeilqasnlrs
plvaesircyqsgqryplemigdfnwpft

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4nfxC (C:)
mfkphvtvacvvhaegkflvveetingkalwnqpaghleadetlveaaarelweetgisa
qpqhfirmhqwiapdktpflrflfaieleqicptqphdsdidccrwvsaeeilqasnlrs
plvaesircyqsgqryplemigdfnwpftkgvi

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4nfxD (D:)
mfkphvtvacvvhaegkflvveetingkalwnqpaghleadetlveaaarelweetgisa
qpqhfirmhqwiapdktpflrflfaieleqicptqphdsdidccrwvsaeeilqasnlrs
plvaesircyqsgqryplemigdfnwpftkgvi

    Sequence, based on observed residues (ATOM records): (download) 
    >4nfxD (D:)
mfkphvtvacvvhaegkflvveetingkalwnqpaghleadetlveaaarelweetgisa
qpqhfirmhqwiapdktpflrflfaieleqicptqphdsdidccrwvsaeeilqasnlrs
plvaesircyqsgqryplemigdfnwpftk

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4nfxE (E:)
mfkphvtvacvvhaegkflvveetingkalwnqpaghleadetlveaaarelweetgisa
qpqhfirmhqwiapdktpflrflfaieleqicptqphdsdidccrwvsaeeilqasnlrs
plvaesircyqsgqryplemigdfnwpftkgvi

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4nfxF (F:)
mfkphvtvacvvhaegkflvveetingkalwnqpaghleadetlveaaarelweetgisa
qpqhfirmhqwiapdktpflrflfaieleqicptqphdsdidccrwvsaeeilqasnlrs
plvaesircyqsgqryplemigdfnwpftkgvi

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4nfxG (G:)
mfkphvtvacvvhaegkflvveetingkalwnqpaghleadetlveaaarelweetgisa
qpqhfirmhqwiapdktpflrflfaieleqicptqphdsdidccrwvsaeeilqasnlrs
plvaesircyqsgqryplemigdfnwpftkgvi

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >4nfxH (H:)
mfkphvtvacvvhaegkflvveetingkalwnqpaghleadetlveaaarelweetgisa
qpqhfirmhqwiapdktpflrflfaieleqicptqphdsdidccrwvsaeeilqasnlrs
plvaesircyqsgqryplemigdfnwpftkgvi

    Sequence, based on observed residues (ATOM records): (download) 
    >4nfxH (H:)
mfkphvtvacvvhaegkflvveetingkalwnqpaghleadetlveaaarelweetgisa
qpqhfirmhqwiapdktpflrflfaieleqicptqphdsdidccrwvsaeeilqasnlrs
plvaesircyqsgqryplemigdfn