PDB entry 4nf6
View 4nf6 on RCSB PDB site
Description: Crystal structure of GluN1/GluN2A ligand-binding domain in complex with glycine and PPDA
Class: transport protein, receptor
Keywords: receptor, glycine and PPDA, transport protein
Deposited on
2013-10-30, released
2014-03-12
The last revision prior to the SCOPe 2.08 freeze date was dated
2017-08-09, with a file datestamp of
2017-08-04.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.29
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Glutamate receptor ionotropic, NMDA 1
Species: Rattus norvegicus [TaxId:10116]
Gene: Grin1, Nmdar1
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4nf6a_ - Chain 'B':
Compound: Glutamate receptor ionotropic, NMDA 2A
Species: Rattus norvegicus [TaxId:10116]
Gene: Grin2a
Database cross-references and differences (RAF-indexed):
- Uniprot Q00959 (1-138)
- Uniprot Q00959 (141-End)
- engineered mutation (238)
Domains in SCOPe 2.08: d4nf6b_ - Heterogens: GLY, 2JL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4nf6A (A:)
gmstrlkivtihqepfvyvkptmsdgtckeeftvngdpvkkvictgpndtspgsprhtvp
qccygfcidlliklartmnftyevhlvadgkfgtqervnnsnkkewngmmgellsgqadm
ivapltinneraqyiefskpfkyqgltilvkkgtritgindprlrnpsdkfiyatvkqss
vdiyfrrqvelstmyrhmekhnyesaaeaiqavrdnklhafiwdsavlefeasqkcdlvt
tgelffrsgfgigmrkdspwkqnvslsilkshengfmedldktwvryqecds
Sequence, based on observed residues (ATOM records): (download)
>4nf6A (A:)
trlkivtihqepfvyvkptmsdgtckeeftvngdpvkkvictgpnhtvpqccygfcidll
iklartmnftyevhlvadgkfgtqervnsnkkewngmmgellsgqadmivapltinnera
qyiefskpfkyqgltilvkkgtritgindprlrnpsdkfiyatvkqssvdiyfrrqvels
tmyrhmekhnyesaaeaiqavrdnklhafiwdsavlefeasqkcdlvttgelffrsgfgi
gmrkdspwkqnvslsilkshengfmedldktwvryqec
- Chain 'B':
Sequence, based on SEQRES records: (download)
>4nf6B (B:)
sddnhlsivtleeapfvivedidpltetcvrntvpcrkfvkinnstnegmnvkkcckgfc
idilkklsrtvkftydlylvtngkhgkkvnnvwngmigevvyqravmavgsltineerse
vvdfsvpfvetgisvmvsrgtqvtglsdkkfqrphdysppfrfgtvpngsternirnnyp
ymhqymtrfnqrgvedalvslktgkldafiydaavlnykagrdegcklvtigsgyifatt
gygialqkgspwkrqidlallqfvgdgemeeletlwltgichn
Sequence, based on observed residues (ATOM records): (download)
>4nf6B (B:)
ddnhlsivtleeapfvivedidtetcvrntvpcrkfvkinnstnegmnvkkcckgfcidi
lkklsrtvkftydlylvtngkhgkkvnnvwngmigevvyqravmavgsltineersevvd
fsvpfvetgisvmvsrgtqvtglsdkkfqrphdysppfrfgtvpngsternirnnypymh
qymtrfnqrgvedalvslktgkldafiydaavlnykagrdegcklvtigsgyifattgyg
ialqkgspwkrqidlallqfvgdgemeeletlwltgic