PDB entry 4nf6

View 4nf6 on RCSB PDB site
Description: Crystal structure of GluN1/GluN2A ligand-binding domain in complex with glycine and PPDA
Class: transport protein, receptor
Keywords: receptor, glycine and PPDA, transport protein
Deposited on 2013-10-30, released 2014-03-12
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-08-09, with a file datestamp of 2017-08-04.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glutamate receptor ionotropic, NMDA 1
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Grin1, Nmdar1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P35439 (Start-151)
    • Uniprot P35439 (154-End)
      • expression tag (152-153)
    Domains in SCOPe 2.08: d4nf6a_
  • Chain 'B':
    Compound: Glutamate receptor ionotropic, NMDA 2A
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Grin2a
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q00959 (1-138)
    • Uniprot Q00959 (141-End)
      • engineered mutation (238)
    Domains in SCOPe 2.08: d4nf6b_
  • Heterogens: GLY, 2JL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >4nf6A (A:)
    gmstrlkivtihqepfvyvkptmsdgtckeeftvngdpvkkvictgpndtspgsprhtvp
    qccygfcidlliklartmnftyevhlvadgkfgtqervnnsnkkewngmmgellsgqadm
    ivapltinneraqyiefskpfkyqgltilvkkgtritgindprlrnpsdkfiyatvkqss
    vdiyfrrqvelstmyrhmekhnyesaaeaiqavrdnklhafiwdsavlefeasqkcdlvt
    tgelffrsgfgigmrkdspwkqnvslsilkshengfmedldktwvryqecds
    

    Sequence, based on observed residues (ATOM records): (download)
    >4nf6A (A:)
    trlkivtihqepfvyvkptmsdgtckeeftvngdpvkkvictgpnhtvpqccygfcidll
    iklartmnftyevhlvadgkfgtqervnsnkkewngmmgellsgqadmivapltinnera
    qyiefskpfkyqgltilvkkgtritgindprlrnpsdkfiyatvkqssvdiyfrrqvels
    tmyrhmekhnyesaaeaiqavrdnklhafiwdsavlefeasqkcdlvttgelffrsgfgi
    gmrkdspwkqnvslsilkshengfmedldktwvryqec
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >4nf6B (B:)
    sddnhlsivtleeapfvivedidpltetcvrntvpcrkfvkinnstnegmnvkkcckgfc
    idilkklsrtvkftydlylvtngkhgkkvnnvwngmigevvyqravmavgsltineerse
    vvdfsvpfvetgisvmvsrgtqvtglsdkkfqrphdysppfrfgtvpngsternirnnyp
    ymhqymtrfnqrgvedalvslktgkldafiydaavlnykagrdegcklvtigsgyifatt
    gygialqkgspwkrqidlallqfvgdgemeeletlwltgichn
    

    Sequence, based on observed residues (ATOM records): (download)
    >4nf6B (B:)
    ddnhlsivtleeapfvivedidtetcvrntvpcrkfvkinnstnegmnvkkcckgfcidi
    lkklsrtvkftydlylvtngkhgkkvnnvwngmigevvyqravmavgsltineersevvd
    fsvpfvetgisvmvsrgtqvtglsdkkfqrphdysppfrfgtvpngsternirnnypymh
    qymtrfnqrgvedalvslktgkldafiydaavlnykagrdegcklvtigsgyifattgyg
    ialqkgspwkrqidlallqfvgdgemeeletlwltgic