SCOPe 2.08: Structural Classification of Proteins

PDB entry 4ndy

View 4ndy on RCSB PDB site
Description: human mhf1-mhf2 dna complex
Deposited on 2013-10-28, released 2014-01-22
The last revision was dated 2014-01-22, with a file datestamp of 2014-01-17.
Experiment type: XRAY
Resolution: 7 Å
R-factor: 0.244
AEROSPACI score: -0.04 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Centromere protein S
Species: Homo sapiens [TaxId:9606]
Gene: APITD1, CENPS, FAAP16, MHF1
Database cross-references and differences (RAF-indexed):
- Uniprot Q8N2Z9 (0-91)
  - conflict (25)
  - expression tag (92)
Chain 'B':
Compound: Centromere protein X
Species: Homo sapiens [TaxId:9606]
Gene: STRA13, CENPX, FAAP10, MHF2
Database cross-references and differences (RAF-indexed):
- Uniprot A8MT69 (0-73)
Chain 'C':
Compound: Centromere protein S
Species: Homo sapiens [TaxId:9606]
Gene: APITD1, CENPS, FAAP16, MHF1
Database cross-references and differences (RAF-indexed):
- Uniprot Q8N2Z9 (0-91)
  - conflict (25)
  - expression tag (92)
Chain 'D':
Compound: Centromere protein X
Species: Homo sapiens [TaxId:9606]
Gene: STRA13, CENPX, FAAP10, MHF2
Database cross-references and differences (RAF-indexed):
- Uniprot A8MT69 (0-73)
Chain 'E':
Compound: DNA (26-mer)
Species: Synthetic DNA, synthetic [TaxId:32630]
Chain 'F':
Compound: DNA (26-mer)
Species: Synthetic DNA, synthetic [TaxId:32630]
Chain 'G':
Compound: Centromere protein S
Species: Homo sapiens [TaxId:9606]
Gene: APITD1, CENPS, FAAP16, MHF1
Database cross-references and differences (RAF-indexed):
- Uniprot Q8N2Z9 (0-91)
  - conflict (25)
  - expression tag (92)
Chain 'H':
Compound: Centromere protein X
Species: Homo sapiens [TaxId:9606]
Gene: STRA13, CENPX, FAAP10, MHF2
Database cross-references and differences (RAF-indexed):
- Uniprot A8MT69 (0-73)
Chain 'I':
Compound: Centromere protein S
Species: Homo sapiens [TaxId:9606]
Gene: APITD1, CENPS, FAAP16, MHF1
Database cross-references and differences (RAF-indexed):
- Uniprot Q8N2Z9 (0-91)
  - conflict (25)
  - expression tag (92-104)
Chain 'J':
Compound: Centromere protein S
Species: Homo sapiens [TaxId:9606]
Gene: APITD1, CENPS, FAAP16, MHF1
Database cross-references and differences (RAF-indexed):
- Uniprot Q8N2Z9 (0-91)
  - conflict (25)
  - expression tag (92)
Chain 'K':
Compound: Centromere protein S
Species: Homo sapiens [TaxId:9606]
Gene: APITD1, CENPS, FAAP16, MHF1
Database cross-references and differences (RAF-indexed):
- Uniprot Q8N2Z9 (0-91)
  - conflict (25)
  - expression tag (92-104)
Chain 'L':
Compound: Centromere protein X
Species: Homo sapiens [TaxId:9606]
Gene: STRA13, CENPX, FAAP10, MHF2
Database cross-references and differences (RAF-indexed):
- Uniprot A8MT69 (0-73)
Chain 'M':
Compound: Centromere protein X
Species: Homo sapiens [TaxId:9606]
Gene: STRA13, CENPX, FAAP10, MHF2
Database cross-references and differences (RAF-indexed):
- Uniprot A8MT69 (0-73)
Chain 'N':
Compound: Centromere protein X
Species: Homo sapiens [TaxId:9606]
Gene: STRA13, CENPX, FAAP10, MHF2
Database cross-references and differences (RAF-indexed):
- Uniprot A8MT69 (0-73)
Chain 'O':
Compound: DNA (26-mer)
Species: Synthetic DNA, synthetic [TaxId:32630]
Chain 'P':
Compound: DNA (26-mer)
Species: Synthetic DNA, synthetic [TaxId:32630]
Chain 'Q':
Compound: Centromere protein S
Species: Homo sapiens [TaxId:9606]
Gene: APITD1, CENPS, FAAP16, MHF1
Database cross-references and differences (RAF-indexed):
- Uniprot Q8N2Z9 (0-91)
  - conflict (25)
  - expression tag (92-104)
Chain 'R':
Compound: Centromere protein S
Species: Homo sapiens [TaxId:9606]
Gene: APITD1, CENPS, FAAP16, MHF1
Database cross-references and differences (RAF-indexed):
- Uniprot Q8N2Z9 (0-91)
  - conflict (25)
  - expression tag (92)
Chain 'S':
Compound: Centromere protein S
Species: Homo sapiens [TaxId:9606]
Gene: APITD1, CENPS, FAAP16, MHF1
Database cross-references and differences (RAF-indexed):
- Uniprot Q8N2Z9 (0-91)
  - conflict (25)
  - expression tag (92)
Chain 'T':
Compound: Centromere protein S
Species: Homo sapiens [TaxId:9606]
Gene: APITD1, CENPS, FAAP16, MHF1
Database cross-references and differences (RAF-indexed):
- Uniprot Q8N2Z9 (0-91)
  - conflict (25)
  - expression tag (92-104)
Chain 'U':
Compound: Centromere protein X
Species: Homo sapiens [TaxId:9606]
Gene: STRA13, CENPX, FAAP10, MHF2
Database cross-references and differences (RAF-indexed):
- Uniprot A8MT69 (0-73)
Chain 'V':
Compound: Centromere protein X
Species: Homo sapiens [TaxId:9606]
Gene: STRA13, CENPX, FAAP10, MHF2
Database cross-references and differences (RAF-indexed):
- Uniprot A8MT69 (0-73)
Chain 'W':
Compound: Centromere protein X
Species: Homo sapiens [TaxId:9606]
Gene: STRA13, CENPX, FAAP10, MHF2
Database cross-references and differences (RAF-indexed):
- Uniprot A8MT69 (0-73)
Chain 'X':
Compound: Centromere protein X
Species: Homo sapiens [TaxId:9606]
Gene: STRA13, CENPX, FAAP10, MHF2
Database cross-references and differences (RAF-indexed):
- Uniprot A8MT69 (0-73)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

Chain 'A':
Sequence, based on SEQRES records:

>4ndyA (A:)
syqqrlkaavhytvgclceevaldkamqfskqtiaaiseltfrqcenfakdlemfarhak
rttintedvkllarrsnsllkyitdkseeiaqanlerkaqkkkks

Sequence, based on observed residues (ATOM records):

>4ndyA (A:)
syqqrlkaavhytvgclceevaldkamqfskqtiaaiseltfrqcenfakdlemfarhak
rttintedvkllarrsnsllkyitdkseeiaqa

Chain 'B':
Sequence; same for both SEQRES and ATOM records:

>4ndyB (B:)
sgfrkelvsrllhlhfkddktkvsgdalqlmvellkvfvveaavrgvrqaqaedalrvdv
dqlekvlpqllldf

Chain 'C':
Sequence, based on SEQRES records:

>4ndyC (C:)
syqqrlkaavhytvgclceevaldkamqfskqtiaaiseltfrqcenfakdlemfarhak
rttintedvkllarrsnsllkyitdkseeiaqanlerkaqkkkks

Sequence, based on observed residues (ATOM records):

>4ndyC (C:)
syqqrlkaavhytvgclceevaldkamqfskqtiaaiseltfrqcenfakdlemfarhak
rttintedvkllarrsnsllkyitdkseeiaqa

Chain 'D':
Sequence; same for both SEQRES and ATOM records:

>4ndyD (D:)
sgfrkelvsrllhlhfkddktkvsgdalqlmvellkvfvveaavrgvrqaqaedalrvdv
dqlekvlpqllldf

Chain 'E':
No sequence available.
Chain 'F':
No sequence available.

Chain 'G':
Sequence, based on SEQRES records:

>4ndyG (G:)
syqqrlkaavhytvgclceevaldkamqfskqtiaaiseltfrqcenfakdlemfarhak
rttintedvkllarrsnsllkyitdkseeiaqanlerkaqkkkks

Sequence, based on observed residues (ATOM records):

>4ndyG (G:)
syqqrlkaavhytvgclceevaldkamqfskqtiaaiseltfrqcenfakdlemfarhak
rttintedvkllarrsnsllkyitdkseeiaqa

Chain 'H':
Sequence; same for both SEQRES and ATOM records:

>4ndyH (H:)
sgfrkelvsrllhlhfkddktkvsgdalqlmvellkvfvveaavrgvrqaqaedalrvdv
dqlekvlpqllldf

Chain 'I':
Sequence; same for both SEQRES and ATOM records:

>4ndyI (I:)
syqqrlkaavhytvgclceevaldkamqfskqtiaaiseltfrqcenfakdlemfarhak
rttintedvkllarrsnsllkyitdkseeiaqanlerkaqkkkks

Chain 'J':
Sequence, based on SEQRES records:

>4ndyJ (J:)
syqqrlkaavhytvgclceevaldkamqfskqtiaaiseltfrqcenfakdlemfarhak
rttintedvkllarrsnsllkyitdkseeiaqanlerkaqkkkks

Sequence, based on observed residues (ATOM records):

>4ndyJ (J:)
syqqrlkaavhytvgclceevaldkamqfskqtiaaiseltfrqcenfakdlemfarhak
rttintedvkllarrsnsllkyitdkseeiaqa

Chain 'K':
Sequence; same for both SEQRES and ATOM records:

>4ndyK (K:)
syqqrlkaavhytvgclceevaldkamqfskqtiaaiseltfrqcenfakdlemfarhak
rttintedvkllarrsnsllkyitdkseeiaqanlerkaqkkkks

Chain 'L':
Sequence; same for both SEQRES and ATOM records:

>4ndyL (L:)
sgfrkelvsrllhlhfkddktkvsgdalqlmvellkvfvveaavrgvrqaqaedalrvdv
dqlekvlpqllldf

Chain 'M':
Sequence; same for both SEQRES and ATOM records:

>4ndyM (M:)
sgfrkelvsrllhlhfkddktkvsgdalqlmvellkvfvveaavrgvrqaqaedalrvdv
dqlekvlpqllldf

Chain 'N':
Sequence; same for both SEQRES and ATOM records:

>4ndyN (N:)
sgfrkelvsrllhlhfkddktkvsgdalqlmvellkvfvveaavrgvrqaqaedalrvdv
dqlekvlpqllldf

Chain 'O':
No sequence available.
Chain 'P':
No sequence available.

Chain 'Q':
Sequence; same for both SEQRES and ATOM records:

>4ndyQ (Q:)
syqqrlkaavhytvgclceevaldkamqfskqtiaaiseltfrqcenfakdlemfarhak
rttintedvkllarrsnsllkyitdkseeiaqanlerkaqkkkks

Chain 'R':
Sequence, based on SEQRES records:

>4ndyR (R:)
syqqrlkaavhytvgclceevaldkamqfskqtiaaiseltfrqcenfakdlemfarhak
rttintedvkllarrsnsllkyitdkseeiaqanlerkaqkkkks

Sequence, based on observed residues (ATOM records):

>4ndyR (R:)
syqqrlkaavhytvgclceevaldkamqfskqtiaaiseltfrqcenfakdlemfarhak
rttintedvkllarrsnsllkyitdkseeiaqa

Chain 'S':
Sequence, based on SEQRES records:

>4ndyS (S:)
syqqrlkaavhytvgclceevaldkamqfskqtiaaiseltfrqcenfakdlemfarhak
rttintedvkllarrsnsllkyitdkseeiaqanlerkaqkkkks

Sequence, based on observed residues (ATOM records):

>4ndyS (S:)
syqqrlkaavhytvgclceevaldkamqfskqtiaaiseltfrqcenfakdlemfarhak
rttintedvkllarrsnsllkyitdkseeiaqa

Chain 'T':
Sequence; same for both SEQRES and ATOM records:

>4ndyT (T:)
syqqrlkaavhytvgclceevaldkamqfskqtiaaiseltfrqcenfakdlemfarhak
rttintedvkllarrsnsllkyitdkseeiaqanlerkaqkkkks

Chain 'U':
Sequence; same for both SEQRES and ATOM records:

>4ndyU (U:)
sgfrkelvsrllhlhfkddktkvsgdalqlmvellkvfvveaavrgvrqaqaedalrvdv
dqlekvlpqllldf

Chain 'V':
Sequence; same for both SEQRES and ATOM records:

>4ndyV (V:)
sgfrkelvsrllhlhfkddktkvsgdalqlmvellkvfvveaavrgvrqaqaedalrvdv
dqlekvlpqllldf

Chain 'W':
Sequence; same for both SEQRES and ATOM records:

>4ndyW (W:)
sgfrkelvsrllhlhfkddktkvsgdalqlmvellkvfvveaavrgvrqaqaedalrvdv
dqlekvlpqllldf

Chain 'X':
Sequence; same for both SEQRES and ATOM records:

>4ndyX (X:)
sgfrkelvsrllhlhfkddktkvsgdalqlmvellkvfvveaavrgvrqaqaedalrvdv
dqlekvlpqllldf