PDB entry 4ndk

View 4ndk on RCSB PDB site
Description: crystal structure of a computational designed engrailed homeodomain variant fused with yfp
Deposited on 2013-10-26, released 2014-11-05
The last revision was dated 2017-10-18, with a file datestamp of 2017-10-13.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: E23P-YFP, GFP-like fluorescent chromoprotein FP506, related, chimeric construct,
    Species: Eimeria acervulina [TaxId:5801]
    Gene: EAH_00062270
    Database cross-references and differences (RAF-indexed):
    • PDB 4NDK (Start-51)
    • Uniprot U6GSR1 (52-End)
      • see remark 999 (98)
      • see remark 999 (109)
      • see remark 999 (116)
      • chromophore (117)
      • see remark 999 (121)
      • see remark 999 (205)
      • see remark 999 (215)
      • see remark 999 (227)
      • see remark 999 (258)
      • chromophore (117)
  • Chain 'B':
    Compound: E23P-YFP, GFP-like fluorescent chromoprotein FP506, related, chimeric construct,
    Species: Eimeria acervulina [TaxId:5801]
    Gene: EAH_00062270
    Database cross-references and differences (RAF-indexed):
    • PDB 4NDK (Start-51)
    • Uniprot U6GSR1 (52-End)
      • see remark 999 (98)
      • see remark 999 (109)
      • see remark 999 (116)
      • chromophore (117)
      • see remark 999 (121)
      • see remark 999 (205)
      • see remark 999 (215)
      • see remark 999 (227)
      • see remark 999 (258)
      • chromophore (117)
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4ndkA (A:)
mtewseeqkkaldlafyfdrrltpewrrylsqrlglneeqierwfrrkeqqimvskgeel
ftgvvpilveldgdvnghkfsvsgegegdatygkltlklicttgklpvpfptlvttlgyg
lqcfarypdhmkqhdffksampegyvqertiffkddgnyktraevkfegdtlvnrielkg
idfkedgnilghkleynynshnvyitadkqkngikanfkirhniedggvqladhyqqntp
igdgpvllpdnhylsyqsklskdpnekrdhmvllefvtaagitlgmdelykgghhhhhh

    Sequence, based on observed residues (ATOM records):
    >4ndkA (A:)
qkkaldlafyfdrrltpewrrylsqrlglneeqierwfrrkeqqimvskgeelftgvvpi
lveldgdvnghkfsvsgegegdatygkltlklicttgklpvpfptlvttlgyglqcfary
pdhmkqhdffksampegyvqertiffkddgnyktraevkfegdtlvnrielkgidfkedg
nilghkleynynshnvyitadkqkngikanfkirhniedggvqladhyqqntpigdgpvl
lpdnhylsyqsklskdpnekrdhmvllefvtaag

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4ndkB (B:)
mtewseeqkkaldlafyfdrrltpewrrylsqrlglneeqierwfrrkeqqimvskgeel
ftgvvpilveldgdvnghkfsvsgegegdatygkltlklicttgklpvpfptlvttlgyg
lqcfarypdhmkqhdffksampegyvqertiffkddgnyktraevkfegdtlvnrielkg
idfkedgnilghkleynynshnvyitadkqkngikanfkirhniedggvqladhyqqntp
igdgpvllpdnhylsyqsklskdpnekrdhmvllefvtaagitlgmdelykgghhhhhh

    Sequence, based on observed residues (ATOM records):
    >4ndkB (B:)
qkkaldlafyfdrrltpewrrylsqrlglneeqierwfrrkeqqimvskgeelftgvvpi
lveldgdvnghkfsvsgegegdatygkltlklicttgklpvpfptlvttlgyglqcfary
pdhmkqhdffksampegyvqertiffkddgnyktraevkfegdtlvnrielkgidfkedg
nilghkleynynshnvyitadkqkngikanfkirhniedggvqladhyqqntpigdgpvl
lpdnhylsyqsklskdpnekrdhmvllefvtaagi