PDB entry 4ndg

View 4ndg on RCSB PDB site
Description: Human Aprataxin (Aptx) bound to RNA-DNA and Zn - adenosine vanadate transition state mimic complex
Deposited on 2013-10-26, released 2013-12-18
The last revision was dated 2014-02-05, with a file datestamp of 2014-01-31.
Experiment type: XRAY
Resolution: 2.54 Å
R-factor: 0.211
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Aprataxin
    Species: Homo sapiens [TaxId:9606]
    Gene: APTX, AXA1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7Z2E3 (4-End)
      • expression tag (3)
  • Chain 'B':
    Compound: Aprataxin
    Species: Homo sapiens [TaxId:9606]
    Gene: APTX, AXA1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7Z2E3 (4-End)
      • expression tag (3)
  • Chain 'D':
    Compound: 5'-r(p*g)-d(p*tp*tp*ap*tp*gp*ap*tp*tp*c)-3'
  • Chain 'E':
    Compound: 5'-d(*gp*ap*ap*tp*cp*ap*tp*ap*ap*c)-3'
  • Chain 'G':
    Compound: 5'-r(p*g)-d(p*tp*tp*ap*tp*gp*ap*tp*tp*c)-3'
  • Chain 'H':
    Compound: 5'-d(*gp*ap*ap*tp*cp*ap*tp*ap*ap*c)-3'
  • Heterogens: V5A, ZN, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4ndgA (A:)
gshmghwsqglkismqdpkmqvykdeqvvvikdkypkaryhwlvlpwtsisslkavareh
lellkhmhtvgekvivdfagssklrfrlgyhaipsmshvhlhvisqdfdspclknkkhwn
sfnteyflesqaviemvqeagrvtvrdgmpellklplrchecqqllpsipqlkehlrkhw
tq

    Sequence, based on observed residues (ATOM records):
    >4ndgA (A:)
mghwsqglkismqdpkmqvykdeqvvvikdkypkaryhwlvlpwtsisslkavarehlel
lkhmhtvgekvivdfagssklrfrlgyhaipsmshvhlhvisqdfdspclknkkhwnsfn
teyflesqaviemvqeagrvtvrdgmpellklplrchecqqllpsipqlkehlrkhwt

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4ndgB (B:)
gshmghwsqglkismqdpkmqvykdeqvvvikdkypkaryhwlvlpwtsisslkavareh
lellkhmhtvgekvivdfagssklrfrlgyhaipsmshvhlhvisqdfdspclknkkhwn
sfnteyflesqaviemvqeagrvtvrdgmpellklplrchecqqllpsipqlkehlrkhw
tq

    Sequence, based on observed residues (ATOM records):
    >4ndgB (B:)
mghwsqglkismqdpkmqvykdeqvvvikdkypkaryhwlvlpwtsisslkavarehlel
lkhmhtvgekvivdfagssklrfrlgyhaipsmshvhlhvisqdfdspclknkkhwnsfn
teyflesqaviemvqeagrvtvrdgmpellklplrchecqqllpsipqlkehlrkhw

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.