PDB entry 4nd7
View 4nd7 on RCSB PDB site
Description: Crystal structure of apo 3-nitro-tyrosine tRNA synthetase (5B) in the closed form
Class: Ligase
Keywords: Rosmann Fold, 3-nitro-tyrosine amino-acyl tRNA synthetase, tRNA, Ligase
Deposited on
2013-10-25, released
2014-03-19
The last revision prior to the SCOPe 2.07 freeze date was dated
2014-04-16, with a file datestamp of
2014-04-11.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.226
AEROSPACI score: 0.34
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Tyrosine--tRNA ligase
Species: Methanocaldococcus jannaschii [TaxId:243232]
Gene: MJ0389, tyrS, tyrS MJ0389
Database cross-references and differences (RAF-indexed):
- Uniprot Q57834 (0-305)
- engineered mutation (31)
- engineered mutation (69)
- engineered mutation (157-158)
- engineered mutation (161)
- expression tag (306-309)
Domains in SCOPe 2.07: d4nd7a1, d4nd7a2 - Heterogens: NA, BME, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4nd7A (A:)
mdefemikrntseiiseeelrevlkkdeksahigfepsgkihlghylqikkmidlqnagf
diiilladlcaylnqkgeldeirkigdynkkvfeamglkakyvygsefqldkdytlnvyr
lalkttlkrarrsmeliaredenpkvaeviypimqvnsahyrgvdvavggmeqrkihmla
rellpkkvvcihnpvltgldgegkmssskgnfiavddspeeirakikkaycpagvvegnp
imeiakyfleypltikrpekfggdltvnsyeeleslfknkelhpmdlknavaeelikile
pirkrllehhhhhh
Sequence, based on observed residues (ATOM records): (download)
>4nd7A (A:)
mdefemikrntseiiseeelrevlkkdeksahigfepsgkihlghylqikkmidlqnagf
diiilladlcaylnqkgeldeirkigdynkkvfeamglkakyvygsefqldkdytlnvyr
lalkttlkrarrsmeliaredenpkvaeviypimqvnsahyrgvdvavggmeqrkihmla
rellpkkvvcihnpvltgldgegkmssskgnfiavddspeeirakikkaycpagvvegnp
imeiakyfleypltikrpekfggdltvnsyeeleslfknkelhpmdlknavaeelikile
pirkrllehh