PDB entry 4ncb

View 4ncb on RCSB PDB site
Description: structure of thermus thermophilus argonaute bound to guide dna and 19- mer target dna with mg2+
Deposited on 2013-10-24, released 2014-01-15
The last revision was dated 2016-06-08, with a file datestamp of 2016-06-03.
Experiment type: XRAY
Resolution: 2.19 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Argonaute
    Species: Thermus thermophilus [TaxId:274]
    Gene: Argonaute, TT_P0026
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Argonaute
    Species: Thermus thermophilus [TaxId:274]
    Gene: Argonaute, TT_P0026
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: 5'-d(p*tp*gp*ap*gp*gp*tp*ap*gp*tp*ap*gp*gp*tp*tp*gp*tp*ap*tp*ap*gp*t)-3'
  • Chain 'D':
    Compound: 5'-d(*tp*ap*tp*ap*cp*ap*ap*cp*cp*tp*ap*cp*tp*ap*cp*cp*tp*cp*g)-3'
  • Chain 'E':
    Compound: 5'-d(p*tp*gp*ap*gp*gp*tp*ap*gp*tp*ap*gp*gp*tp*tp*gp*tp*ap*tp*ap*gp*t)-3'
  • Chain 'F':
    Compound: 5'-d(p*tp*ap*cp*tp*ap*cp*cp*tp*cp*g)-3'
  • Chain 'H':
    Compound: 5'-d(*tp*ap*tp*ap*cp*ap*ap*cp*c)-3'
  • Chain 'P':
    Compound: 5'-d(*tp*ap*tp*ap*cp*ap*ap*cp*c)-3'
  • Heterogens: DT, MG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4ncbA (A:)
mnhlgktevflnrfalrplnpeelrpwrlevvldpppgreevypllaqvarraggvtvrm
gdglaswsppevlvlegtlarmgqtyayrlypkgrrpldpkdpgersvlsalarrllqer
lrrlegvwveglavyrrehargpgwrvlggavldlwvsdsgafllevdpayrilcemsle
awlaqghplpkrvrnaydrrtwellrlgeedpkelplpgglslldyhaskgrlqgreggr
vawvadpkdprkpiphltgllvpvltledlheeegslalslpweerrrrtreiaswigrr
lglgtpeavraqayrlsipklmgrravskpadalrvgfyraqetalallrldgaqgwpef
lrrallrafgasgaslrlhtlhahpsqglafrealrkakeegvqavlvltppmawedrnr
lkalllreglpsqilnvplreeerhrwenallgllakaglqvvalsgaypaelavgfdag
gresfrfggaacavggdgghllwtlpeaqageripqevvwdlleetlwafrrkagrlpsr
vlllrdgrvpqdefalalealaregiaydlvsvrksgggrvypvqgrladglyvpledkt
fllltvhrdfrgtprplklvheagdtplealahqifhltrlypasgfafprlpaplhlad
rlvkevgrlgirhlkevdreklffv

    Sequence, based on observed residues (ATOM records):
    >4ncbA (A:)
gktevflnrfalrplnpeelrpwrlevvldpppgreevypllaqvarraggvtvrmgdgl
aswsppevlvlegtlarmgqtyayrlypkgrrpldpkdpgersvlsalarrllqerlrrl
egvwveglavyrrehargpgwrvlggavldlwvsdsgafllevdpayrilcemsleawla
qghplpkrvrnaydrrtwellrlgeedpkelplpgglslldyhaskgrlqgreggrvawv
adpkdprkpiphltgllvpvltledlslalslpweerrrrtreiaswigrrlglgtpeav
raqayrlsipklmgrravskpadalrvgfyraqetalallrldgaqgwpeflrrallraf
gasgaslrlhtlhahpsqglafrealrkakeegvqavlvltppmawedrnrlkalllreg
lpsqilnvplreeerhrwenallgllakaglqvvalsgaypaelavgfdaggresfrfgg
aacavggdgghllwtlpeaqageripqevvwdlleetlwafrrkagrlpsrvlllrdgrv
pqdefalalealaregiaydlvsvrksgggrvypvqgrladglyvpledktfllltvhrd
frgtprplklvheagdtplealahqifhltrlypasgfafprlpaplhladrlvkevgrl
girhlkevdreklffv

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4ncbB (B:)
mnhlgktevflnrfalrplnpeelrpwrlevvldpppgreevypllaqvarraggvtvrm
gdglaswsppevlvlegtlarmgqtyayrlypkgrrpldpkdpgersvlsalarrllqer
lrrlegvwveglavyrrehargpgwrvlggavldlwvsdsgafllevdpayrilcemsle
awlaqghplpkrvrnaydrrtwellrlgeedpkelplpgglslldyhaskgrlqgreggr
vawvadpkdprkpiphltgllvpvltledlheeegslalslpweerrrrtreiaswigrr
lglgtpeavraqayrlsipklmgrravskpadalrvgfyraqetalallrldgaqgwpef
lrrallrafgasgaslrlhtlhahpsqglafrealrkakeegvqavlvltppmawedrnr
lkalllreglpsqilnvplreeerhrwenallgllakaglqvvalsgaypaelavgfdag
gresfrfggaacavggdgghllwtlpeaqageripqevvwdlleetlwafrrkagrlpsr
vlllrdgrvpqdefalalealaregiaydlvsvrksgggrvypvqgrladglyvpledkt
fllltvhrdfrgtprplklvheagdtplealahqifhltrlypasgfafprlpaplhlad
rlvkevgrlgirhlkevdreklffv

    Sequence, based on observed residues (ATOM records):
    >4ncbB (B:)
gktevflnrfalrplnpeelrpwrlevvldpppgreevypllaqvarraggvtvrmgdgl
aswsppevlvlegtlarmgqtyayrlypkgrrpldpkdpgersvlsalarrllqerlrrl
egvwveglavyrrehargpgwrvlggavldlwvsdsgafllevdpayrilcemsleawla
qghplpkrvrnaydrrtwellrlgeedpkelplpgglslldyhaskgrlqgreggrvawv
adpiphltgllvpvltledlheslalslpweerrrrtreiaswigrrlglgtpeavraqa
yrlsipklmgrravskpadalrvgfyraqetalallrldgaqgwpeflrrallrafgasg
aslrlhtlhahpsqglafrealrkakeegvqavlvltppmawedrnrlkalllreglpsq
ilnvplreeerhrwenallgllakaglqvvalsgaypaelavgfdaggresfrfggaaca
vggdgghllwtlpeaqageripqevvwdlleetlwafrrkagrlpsrvlllrdgrvpqde
falalealaregiaydlvsvrksgggrvypvqgrladglyvpledktfllltvhrdfrgt
prplklvheagdtplealahqifhltrlypasgfafprlpaplhladrlvkevgrlgirh
lkevdreklffv

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'P':
    No sequence available.