PDB entry 4nc1
View 4nc1 on RCSB PDB site
Description: Crystal Structure of TcdA-A2 Bound to A20.1 VHH and A26.8 VHH
Class: immune system
Keywords: Antibody-antigen complex, IMMUNE SYSTEM
Deposited on
2013-10-23, released
2013-12-11
The last revision prior to the SCOPe 2.06 freeze date was dated
2014-02-12, with a file datestamp of
2014-02-07.
Experiment type: XRAY
Resolution: 2.61 Å
R-factor: 0.205
AEROSPACI score: 0.24
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Cell wall-binding repeat protein
Species: Clostridium difficile [TaxId:525258]
Gene: HMPREF0219_0762, TcdA
Database cross-references and differences (RAF-indexed):
- Chain 'B':
Compound: Cell wall-binding repeat protein
Species: Clostridium difficile [TaxId:525258]
Gene: HMPREF0219_0762, TcdA
Database cross-references and differences (RAF-indexed):
- Chain 'C':
Compound: a20.1 vhh
Species: Lama glama [TaxId:9844]
Gene: VHH
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d4nc1c_ - Chain 'D':
Compound: a20.1 vhh
Species: Lama glama [TaxId:9844]
Gene: VHH
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d4nc1d_ - Chain 'E':
Compound: a26.8 vhh
Species: Lama glama [TaxId:9844]
Gene: VHH
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d4nc1e1, d4nc1e2 - Chain 'F':
Compound: a26.8 vhh
Species: Lama glama [TaxId:9844]
Gene: VHH
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d4nc1f1, d4nc1f2 - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
No sequence available.
- Chain 'C':
Sequence, based on SEQRES records: (download)
>4nc1C (C:)
qpamaqaqvqlvesggglaqaggslrlscaasgrtfsmdpmawfrqppgkerefvaagss
tgrttyyadsvkgrftisrdnakntvylqmnslkpedtavyycaaapyganwyrdeyayw
gqgtqvtvssgqagqgseqkliseedlnhhhhhh
Sequence, based on observed residues (ATOM records): (download)
>4nc1C (C:)
qvqlvesggglaqaggslrlscaasgrtfsmdpmawfrqppgkerefvaagsstgrttyy
adsvkgrftisrdnakntvylqmnslkpedtavyycaaapyganwyrdeyaywgqgtqvt
vss
- Chain 'D':
Sequence, based on SEQRES records: (download)
>4nc1D (D:)
qpamaqaqvqlvesggglaqaggslrlscaasgrtfsmdpmawfrqppgkerefvaagss
tgrttyyadsvkgrftisrdnakntvylqmnslkpedtavyycaaapyganwyrdeyayw
gqgtqvtvssgqagqgseqkliseedlnhhhhhh
Sequence, based on observed residues (ATOM records): (download)
>4nc1D (D:)
qvqlvesggglaqaggslrlscaasgrtfsmdpmawfrqppgkerefvaagsstgrttyy
adsvkgrftisrdnakntvylqmnslkpedtavyycaaapyganwyrdeyaywgqgtqvt
vs
- Chain 'E':
Sequence, based on SEQRES records: (download)
>4nc1E (E:)
qvkleesggglvqaggslrlscaasertfsrypvawfrqapgaerefvavisstgtstyy
adsvkgrftisrdnakvtvylqmnnlkredtavyfcavnsqrtrlqdpneydywgqgtqv
tvsshhhhhh
Sequence, based on observed residues (ATOM records): (download)
>4nc1E (E:)
vkleesggglvqaggslrlscaasertfsrypvawfrqapgaerefvavisstgtstyya
dsvkgrftisrdnakvtvylqmnnlkredtavyfcavnsqrtrlqdpneydywgqgtqvt
vssh
- Chain 'F':
Sequence, based on SEQRES records: (download)
>4nc1F (F:)
qvkleesggglvqaggslrlscaasertfsrypvawfrqapgaerefvavisstgtstyy
adsvkgrftisrdnakvtvylqmnnlkredtavyfcavnsqrtrlqdpneydywgqgtqv
tvsshhhhhh
Sequence, based on observed residues (ATOM records): (download)
>4nc1F (F:)
vkleesggglvqaggslrlscaasertfsrypvawfrqapgaerefvavisstgtstyya
dsvkgrftisrdnakvtvylqmnnlkredtavyfcavnsqrtrlqdpneydywgqgtqvt
vss