PDB entry 4n41

View 4n41 on RCSB PDB site
Description: structure of thermus thermophilus argonaute bound to guide dna and 15- mer target dna
Deposited on 2013-10-08, released 2014-01-15
The last revision was dated 2017-11-15, with a file datestamp of 2017-11-10.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Argonaute
    Species: Thermus thermophilus [TaxId:274]
    Gene: Argonaute, TT_P0026
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Argonaute
    Species: Thermus thermophilus [TaxId:274]
    Gene: Argonaute, TT_P0026
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: 5'-d(p*tp*gp*ap*gp*gp*tp*ap*gp*tp*ap*gp*gp*tp*t*gp*tp*ap*tp*ap*gp*t)-3'
  • Chain 'D':
    Compound: 5'-d(p*ap*cp*cp*tp*ap*cp*tp*ap*cp*cp*tp*cp*g)-3'
  • Chain 'E':
    Compound: 5'-d(p*tp*gp*ap*gp*gp*tp*ap*gp*tp*ap*gp*gp*tp*t*gp*tp*ap*tp*ap*gp*t)-3'
  • Chain 'F':
    Compound: 5'-d(*ap*ap*cp*cp*tp*ap*cp*tp*gp*cp*cp*tp*cp*g)-3'
  • Heterogens: MG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4n41A (A:)
mnhlgktevflnrfalrplnpeelrpwrlevvldpppgreevypllaqvarraggvtvrm
gdglaswsppevlvlegtlarmgqtyayrlypkgrrpldpkdpgersvlsalarrllqer
lrrlegvwveglavyrrehargpgwrvlggavldlwvsdsgafllevdpayrilcemsle
awlaqghplpkrvrnaydrrtwellrlgeedpkelplpgglslldyhaskgrlqgreggr
vawvadpkdprkpiphltgllvpvltledlheeegslalslpweerrrrtreiaswigrr
lglgtpeavraqayrlsipklmgrravskpadalrvgfyraqetalallrldgaqgwpef
lrrallrafgasgaslrlhtlhahpsqglafrealrkakeegvqavlvltppmawedrnr
lkalllreglpsqilnvplreeerhrwenallgllakaglqvvalsgaypaelavgfdag
gresfrfggaacavggdgghllwtlpeaqageripqevvwdlleetlwafrrkagrlpsr
vlllrdgrvpqdefalalealaregiaydlvsvrksgggrvypvqgrladglyvpledkt
fllltvhrdfrgtprplklvheagdtplealahqifhltrlypasgfafprlpaplhlad
rlvkevgrlgirhlkevdreklffv

    Sequence, based on observed residues (ATOM records):
    >4n41A (A:)
gktevflnrfalrplnpeelrpwrlevvldppllaqvarraggvtvrmgdglaswsppev
lvlegtlarmgqtyayrlypkgrrpldpkdpgersvlsalarrllqerlrrlegvwvegl
avyrrehargpgwrvlggavldlwvsdsgafllevdpayrilcemsleawlaqghplpkr
vrnaydrrtwellrlgeedpkelldyhaskqgreggrvawvadpkdprkpiphltgllvp
vltledlheelalslpweerrrrtreiaswigrrlglgtpeavraqayrlsipklmgrra
vskpadalrvgfyraqetalallrldgaqgwpeflrrallrafgasgaslrlhtlhahps
qglafrealrkakeegvqavlvltppmawedrnrlkalllreglpsqilnvplreeerhr
wenallgllakaglqvvalsgaypaelavgfdaggresfrfggaacavgggghllwtlpe
aqageripqevvwdlleetlwafrrkagrlpsrvlllrdgrvpqdefalalealaregia
ydlvsvrksgggrvypvqgrladglyvpledktfllltvhrdfrgtprplklvheagdtp
lealahqifhltrlypasgfafprlpaplhladrlvkevgrlgirhlkevdreklffv

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4n41B (B:)
mnhlgktevflnrfalrplnpeelrpwrlevvldpppgreevypllaqvarraggvtvrm
gdglaswsppevlvlegtlarmgqtyayrlypkgrrpldpkdpgersvlsalarrllqer
lrrlegvwveglavyrrehargpgwrvlggavldlwvsdsgafllevdpayrilcemsle
awlaqghplpkrvrnaydrrtwellrlgeedpkelplpgglslldyhaskgrlqgreggr
vawvadpkdprkpiphltgllvpvltledlheeegslalslpweerrrrtreiaswigrr
lglgtpeavraqayrlsipklmgrravskpadalrvgfyraqetalallrldgaqgwpef
lrrallrafgasgaslrlhtlhahpsqglafrealrkakeegvqavlvltppmawedrnr
lkalllreglpsqilnvplreeerhrwenallgllakaglqvvalsgaypaelavgfdag
gresfrfggaacavggdgghllwtlpeaqageripqevvwdlleetlwafrrkagrlpsr
vlllrdgrvpqdefalalealaregiaydlvsvrksgggrvypvqgrladglyvpledkt
fllltvhrdfrgtprplklvheagdtplealahqifhltrlypasgfafprlpaplhlad
rlvkevgrlgirhlkevdreklffv

    Sequence, based on observed residues (ATOM records):
    >4n41B (B:)
gktevflnrfalrplnpeelrpwrlevvldpppgreevypllaqvarraggvtvrmgdgl
aswsppevlvlegtlarmgqtyayrlypkgrrpldpkdpgersvlsalarrllqerlrrl
egvwveglavyrrehargpgwrvlggavldlwvsdsgafllevdpayrilcemsleawla
qghplpkrvrnaydrrtwellrlgeedpkelplpgglslldyhaskgrlqgreggrvawv
adpkdprkpiphltgllvpvltledlhslalslpweerrrrtreiaswigrrlglgtpea
vraqayrlsipklmgrravskpadalrvgfyraqetalallrldgaqgwpeflrrallra
fgasgaslrlhtlhahpsqglafrealrkakeegvqavlvltppmawedrnrlkalllre
glpsqilnvplreeerhrwenallgllakaglqvvalsgaypaelavgfdaggresfrfg
gaacavhllwtlpeaqageripqevvwdlleetlwafrrkagrlpsrvlllrdgrvpqde
falalealaregiaydlvsvrksgggrvypvqgrladglyvpledktfllltvhrdfrgt
prplklvheagdtplealahqifhltrlypasgfafprlpaplhladrlvkevgrlgivd
reklffv

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.