PDB entry 4myw
View 4myw on RCSB PDB site
Description: Structure of HSV-2 gD bound to nectin-1
Class: viral protein/cell adhesion
Keywords: IgV-like core, N-/C-terminal extensions, tandem arranged V-C-C Ig-like domains, receptor binding, cell surface attachment, viral, cellular surface, VIRAL PROTEIN-CELL ADHESION complex
Deposited on
2013-09-28, released
2014-10-01
The last revision prior to the SCOPe 2.06 freeze date was dated
2014-10-01, with a file datestamp of
2014-09-26.
Experiment type: XRAY
Resolution: 3.19 Å
R-factor: 0.198
AEROSPACI score: 0.16
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Envelope glycoprotein D
Species: Human herpesvirus 2 [TaxId:10313]
Gene: gD, US6
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d4mywa_ - Chain 'B':
Compound: Poliovirus receptor-related protein 1
Species: Homo sapiens [TaxId:9606]
Gene: HVEC, nectin-1, PRR1, PVRL1
Database cross-references and differences (RAF-indexed):
- Chain 'C':
Compound: Envelope glycoprotein D
Species: Human herpesvirus 2 [TaxId:10313]
Gene: gD, US6
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d4mywc_ - Chain 'D':
Compound: Poliovirus receptor-related protein 1
Species: Homo sapiens [TaxId:9606]
Gene: HVEC, nectin-1, PRR1, PVRL1
Database cross-references and differences (RAF-indexed):
- Heterogens: NAG, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4mywA (A:)
adlkyaladpslkmadpnrfrgknlpvldqltdppgvkrvyhiqpsledpfqppsipitv
yyavleracrsvllhapseapqivrgasdearkhtynltiawyrmgdncaipitvmeyte
cpynkslgvcpirtqprwsyydsfsavsednlgflmhapafetagtylrlvkindwteit
qfilehrarasckyalplrippaacltskayqqgvtvdsigmlprfipenqrtvalyslk
iagwhgpkppytstllppelsdttnatqpelvpedpedsalledpagthhhhhh
Sequence, based on observed residues (ATOM records): (download)
>4mywA (A:)
pvldqltdppgvkrvyhiqpsledpfqppsipitvyyavleracrsvllhapseapqivr
gasdearkhtynltiawyrmgdncaipitvmeytecpynkslgvcpirtqprwsyydsfs
avsednlgflmhapafetagtylrlvkindwteitqfilehrarasckyalplrippaac
ltskayqqgvtvdsigmlprfipenqrtvalyslkiagwhgpkppytstllp
- Chain 'B':
No sequence available.
- Chain 'C':
Sequence, based on SEQRES records: (download)
>4mywC (C:)
adlkyaladpslkmadpnrfrgknlpvldqltdppgvkrvyhiqpsledpfqppsipitv
yyavleracrsvllhapseapqivrgasdearkhtynltiawyrmgdncaipitvmeyte
cpynkslgvcpirtqprwsyydsfsavsednlgflmhapafetagtylrlvkindwteit
qfilehrarasckyalplrippaacltskayqqgvtvdsigmlprfipenqrtvalyslk
iagwhgpkppytstllppelsdttnatqpelvpedpedsalledpagthhhhhh
Sequence, based on observed residues (ATOM records): (download)
>4mywC (C:)
pvldqltdppgvkrvyhiqpsledpfqppsipitvyyavleracrsvllhapseapqivr
gasdearkhtynltiawyrmgdncaipitvmeytecpynkslgvcpirtqprwsyydsfs
avsednlgflmhapafetagtylrlvkindwteitqfilehrarasckyalplrippaac
ltskayqqgvtvdsigmlprfipenqrtvalyslkiagwhgpkppytstllp
- Chain 'D':
No sequence available.