PDB entry 4mvk
View 4mvk on RCSB PDB site
Description: crystal structure of an engineered lipocalin (anticalin us7) in complex with the alzheimer amyloid peptide fragment vffaed
Deposited on
2013-09-24, released
2015-08-12
The last revision was dated
2016-06-15, with a file datestamp of
2016-06-10.
Experiment type: XRAY
Resolution: 1.5 Å
R-factor: N/A
AEROSPACI score: 0.47
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Neutrophil gelatinase-associated lipocalin
Species: Homo sapiens [TaxId:9606]
Gene: engineered variant US7, HNL, LCN2, LCN2 (NGAL_HUMAN), NGAL
Database cross-references and differences (RAF-indexed):
- Uniprot P80188
- engineered mutation (27)
- engineered mutation (35)
- engineered mutation (39-40)
- engineered mutation (48)
- engineered mutation (69)
- engineered mutation (71-72)
- engineered mutation (76)
- engineered mutation (78)
- engineered mutation (86)
- engineered mutation (95)
- engineered mutation (99)
- engineered mutation (102)
- engineered mutation (105)
- engineered mutation (124)
- engineered mutation (126)
- engineered mutation (131)
- engineered mutation (133)
- Chain 'B':
Compound: Amyloid peptide fragment VFFAED
Species: HOMO SAPIENS, synthetic [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.
- Chain 'A':
Sequence, based on SEQRES records:
>4mvkA (A:)
qdstsdlipapplskvplqqnfqdnqfhgkwyvvgvagnkslredkdpwkmyatiyelke
dksynvtsvgfgtkkchykirtfvpgsqpgeftlgriksrpgrtsalvrvvstnynqham
vffkvvqqnresfnitlygrtkeltselkenfirfskslglpenhivfpvpidqcidgsa
wshpqfek
Sequence, based on observed residues (ATOM records):
>4mvkA (A:)
lipapplskvplqqnfqdnqfhgkwyvvgvagnkslredkdpwkmyatiyelkedksynv
tsvgfgtkkchykirtfvpgsqpgeftlgriksrpgrtsalvrvvstnynqhamvffkvv
qqnresfnitlygrtkeltselkenfirfskslglpenhivfpvpidqcid
- Chain 'B':
Sequence; same for both SEQRES and ATOM records:
>4mvkB (B:)
vffaed