PDB entry 4mj0

View 4mj0 on RCSB PDB site
Description: BK Polyomavirus VP1 pentamer in complex with GD3 oligosaccharide
Class: viral protein
Keywords: antiparallel beta sandwich, jelly-roll topology, viral protein, polyomavirus, receptor-switching, glycan receptor, virus major capsid protein, attachment to host-cell surface receptors
Deposited on 2013-09-03, released 2013-11-06
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.49 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: VP1 capsid protein
    Species: BK polyomavirus [TaxId:10629]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4mj0a_
  • Chain 'B':
    Compound: VP1 capsid protein
    Species: BK polyomavirus [TaxId:10629]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4mj0b_
  • Chain 'C':
    Compound: VP1 capsid protein
    Species: BK polyomavirus [TaxId:10629]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4mj0c_
  • Chain 'D':
    Compound: VP1 capsid protein
    Species: BK polyomavirus [TaxId:10629]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4mj0d_
  • Chain 'E':
    Compound: VP1 capsid protein
    Species: BK polyomavirus [TaxId:10629]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4mj0e_
  • Heterogens: GOL, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4mj0A (A:)
gshmggvevlevktgvdaitevecflnpemgdpdenlrgfslklsaendfssdsperkml
pcystariplpnlnedltcgnllmweavtvqtevigitsmlnlhagsqkvhehgggkpiq
gsnfhffavggdplemqgvlmnyrtkypdgtitpknptaqsqvmntdhkayldknnaypv
ecwvpdpsrnentryfgtftggenvppvlhvtntattvlldeqgvgplckadslyvsaad
icglftnssgtqqwrglaryfkirlrkrsvknpyp

    Sequence, based on observed residues (ATOM records): (download) 
    >4mj0A (A:)
vevlevktgvdaitevecflnpemgdpdenlrgfslklsaendfssdsperkmlpcysta
riplpnlnedltcgnllmweavtvqtevigitsmlnlhagsqkvhehgggkpiqgsnfhf
favggdplemqgvlmnyrtkypdgtitpknptaqsqvmntdhkayldknnaypvecwvpd
psrnentryfgtftggenvppvlhvtntattvlldeqgvgplckadslyvsaadicglft
nssgtqqwrglaryfkirlrkrsvk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4mj0B (B:)
gshmggvevlevktgvdaitevecflnpemgdpdenlrgfslklsaendfssdsperkml
pcystariplpnlnedltcgnllmweavtvqtevigitsmlnlhagsqkvhehgggkpiq
gsnfhffavggdplemqgvlmnyrtkypdgtitpknptaqsqvmntdhkayldknnaypv
ecwvpdpsrnentryfgtftggenvppvlhvtntattvlldeqgvgplckadslyvsaad
icglftnssgtqqwrglaryfkirlrkrsvknpyp

    Sequence, based on observed residues (ATOM records): (download) 
    >4mj0B (B:)
evlevktdaitevecflnpemgdpdenlrgfslklsaendfssdsperkmlpcystarip
lpnlnedltcgnllmweavtvqtevigitsmlnlhagsqkvhehgggkpiqgsnfhffav
ggdplemqgvlmnyrtkypdgtitpknptaqsqvmntdhkayldknnaypvecwvpdpsr
nentryfgtftggenvppvlhvtntattvlldeqgvgplckadslyvsaadicglftnss
gtqqwrglaryfkirlrkrsvkn

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4mj0C (C:)
gshmggvevlevktgvdaitevecflnpemgdpdenlrgfslklsaendfssdsperkml
pcystariplpnlnedltcgnllmweavtvqtevigitsmlnlhagsqkvhehgggkpiq
gsnfhffavggdplemqgvlmnyrtkypdgtitpknptaqsqvmntdhkayldknnaypv
ecwvpdpsrnentryfgtftggenvppvlhvtntattvlldeqgvgplckadslyvsaad
icglftnssgtqqwrglaryfkirlrkrsvknpyp

    Sequence, based on observed residues (ATOM records): (download) 
    >4mj0C (C:)
vlevitevecflnpemgdpdenlrgfslklsaendfssdsperkmlpcystariplpnll
mweavtvqtevigitsmlnlhagsqkvhehgggkpiqgsnfhffavggdplemqgvlmny
rtkypdgtitpknptaqsqvmntdhkayldknnaypvecwvpdpsrnentryfgtftgge
nvppvlhvtntattvlldeqgvgplckadslyvsaadicglftnssgtqqwrglaryfki
rlrkrsv

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4mj0D (D:)
gshmggvevlevktgvdaitevecflnpemgdpdenlrgfslklsaendfssdsperkml
pcystariplpnlnedltcgnllmweavtvqtevigitsmlnlhagsqkvhehgggkpiq
gsnfhffavggdplemqgvlmnyrtkypdgtitpknptaqsqvmntdhkayldknnaypv
ecwvpdpsrnentryfgtftggenvppvlhvtntattvlldeqgvgplckadslyvsaad
icglftnssgtqqwrglaryfkirlrkrsvknpyp

    Sequence, based on observed residues (ATOM records): (download) 
    >4mj0D (D:)
vevlevktgvdaitevecflnpemgdpdenlrgfslklsaendfssdsperkmlpcysta
riplpnlnedltcgnllmweavtvqtevigitsmlnlhagsqkvhehgggkpiqgsnfhf
favggdplemqgvlmnyrtkypdgtitpknptaqsqvmntdhkayldknnaypvecwvpd
psrnentryfgtftggenvppvlhvtntattvlldeqgvgplckadslyvsaadicglft
nssgtqqwrglaryfkirlrkrsvknp

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4mj0E (E:)
gshmggvevlevktgvdaitevecflnpemgdpdenlrgfslklsaendfssdsperkml
pcystariplpnlnedltcgnllmweavtvqtevigitsmlnlhagsqkvhehgggkpiq
gsnfhffavggdplemqgvlmnyrtkypdgtitpknptaqsqvmntdhkayldknnaypv
ecwvpdpsrnentryfgtftggenvppvlhvtntattvlldeqgvgplckadslyvsaad
icglftnssgtqqwrglaryfkirlrkrsvknpyp

    Sequence, based on observed residues (ATOM records): (download) 
    >4mj0E (E:)
vevlevktgitevecflnpemgdpdenlrgfslklsaendfssdsperkmlpcystarip
lpnlnedltcgnllmweavtvqtevigitsmlnlhagsqkvhehgggkpiqgsnfhffav
ggdplemqgvlmnyrtkypdgtitpknptaqsqvmntdhkayldknnaypvecwvpdpsr
nentryfgtftggenvppvlhvtntattvlldeqgvgplckadslyvsaadicglftnss
gtqqwrglaryfkirlrkrsvknp