PDB entry 4mh1

View 4mh1 on RCSB PDB site
Description: Crystal structure and functional studies of quinoprotein L-sorbose dehydrogenase from Ketogulonicigenium vulgare Y25
Class: Oxidoreductase
Keywords: 2-keto-L-gulonic acid, Ketogulonicigenium vulgare, L-sorbose dehydrogenase, Beta-Propeller, Hydrolase, Carbohydrate/Sugar Binding, periplasmic, Oxidoreductase
Deposited on 2013-08-29, released 2014-07-23
The last revision prior to the SCOPe 2.08 freeze date was dated 2014-07-23, with a file datestamp of 2014-07-18.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.226
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Sorbose dehydrogenase
    Species: Ketogulonicigenium vulgare [TaxId:880591]
    Database cross-references and differences (RAF-indexed):
    • Uniprot E3F069 (4-559)
      • expression tag (0-3)
    Domains in SCOPe 2.08: d4mh1a1, d4mh1a2
  • Chain 'B':
    Compound: Sorbose dehydrogenase
    Species: Ketogulonicigenium vulgare [TaxId:880591]
    Database cross-references and differences (RAF-indexed):
    • Uniprot E3F069 (4-559)
      • expression tag (2-3)
    Domains in SCOPe 2.08: d4mh1b1, d4mh1b2
  • Heterogens: PQQ, CA

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4mh1A (A:)
yfqsaqtaitdemlanppagewisygqnqenyrhspltqittenvgqlqlvwargmqpgk
vqvtplihdgvmylanpgdviqaidaktgdliwehrrqlpniatlnsfgeptrgmalygt
nvyfvswdnhlvaldmgtgqvvfdvdrgqgdervsnssgpivangtivagstcqyspfgc
fvsghdsatgeelwrnyfiprageegdetwgndyesrwmtgawgqitydpvtnlvhygst
avgpasetqrgtpggtlygtntrfavrpdtgeivwrhqtlprdnwdqectfemmvtnvdv
qpstemeglqsinpnaatgerrvltgvpcktgtmwqfdaetgeflwardtnyqnmiesid
engivtvnedailkeldveydvcptflggrdwpsaalnpdsgiyfiplnnvcydmmavdq
eftsmdvyntsnvtklppgkdmigridaidistgrtlwsveraaanyspvlstgggvlfn
ggtdryfralsqetgetlwqtrlatvasgqaisyevdgmqyvaiagggvsygsglnsala
gervdstaignavyvfalpq

    Sequence, based on observed residues (ATOM records): (download) 
    >4mh1A (A:)
yfqsaqtaitdemlanppagewisygqnqenyrhspltqittenvgqlqlvwargmqpgk
vqvtplihdgvmylanpgdviqaidaktgdliwehrrqlpniatlsfgeptrgmalygtn
vyfvswdnhlvaldmgtgqvvfdvdrgqgdervsnssgpivangtivagstgcfvsghds
atgeelwrnyfiprarwmtgawgqitydpvtnlvhygstavgtlygtntrfavrpdtgei
vwrhqtlprdnwdqectfemmvtnvdvqpstemeglqsinpnaatgerrvltgvpcktgt
mwqfdaetgeflwardtnyqnmiesidengivtvnedaieydvcptflggrdwpsaalnp
dsgiyfiplnnvcydmmntsnvtklppgkdmigridaidistgrtlwsveraaanyspvl
stgggvlfnggtdryfralsqetgetlwqtrlatvasgqaisyevdgmqyvaiagggvsy
gsglnsalagervdstaignavyvfalpq

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4mh1B (B:)
yfqsaqtaitdemlanppagewisygqnqenyrhspltqittenvgqlqlvwargmqpgk
vqvtplihdgvmylanpgdviqaidaktgdliwehrrqlpniatlnsfgeptrgmalygt
nvyfvswdnhlvaldmgtgqvvfdvdrgqgdervsnssgpivangtivagstcqyspfgc
fvsghdsatgeelwrnyfiprageegdetwgndyesrwmtgawgqitydpvtnlvhygst
avgpasetqrgtpggtlygtntrfavrpdtgeivwrhqtlprdnwdqectfemmvtnvdv
qpstemeglqsinpnaatgerrvltgvpcktgtmwqfdaetgeflwardtnyqnmiesid
engivtvnedailkeldveydvcptflggrdwpsaalnpdsgiyfiplnnvcydmmavdq
eftsmdvyntsnvtklppgkdmigridaidistgrtlwsveraaanyspvlstgggvlfn
ggtdryfralsqetgetlwqtrlatvasgqaisyevdgmqyvaiagggvsygsglnsala
gervdstaignavyvfalpq

    Sequence, based on observed residues (ATOM records): (download) 
    >4mh1B (B:)
qsaqtaitdemlanppagewisygqnqenyrhspltqittenvgqlqlvwargmqpgkvq
vtplihdgvmylanpgdviqaidaktgdliwehrrqlpniatlnsfgeptrgmalygtnv
yfvswdnhlvaldmgtgqvvfdvdrgqdervsnssgpivangtivagstgcfvsghdsat
geelwrnyfiwmtgawgqitydpvtnlvhygsgtntrfavrpdtgeivwrhqtlprdnwd
qectfemmvtnvdvqpstemeglqsinpnaatgerrvltgvpcktgtmwqfdaetgeflw
ardtnyqnmiesidengivtvnedailkeldveydvcptflggrdwpsaalnpdsgiyfi
plnnvcydmmavdqeftsmdvyntsnvtklppgkdmigridaidistgrtlwsveraaan
yspvlstgggvlfnggtdryfralsqetgetlwqtrlatvasgqaisyevdgmqyvaiag
ggvsygsglnsalagervdstaignavyvfalpq