PDB entry 4mdi

View 4mdi on RCSB PDB site
Description: immune receptor
Deposited on 2013-08-22, released 2013-12-04
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hla class II histocompatibility antigen, dr alpha chain
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-DRA, HLA-DRA1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: HLA class II histocompatibility antigen, DRB1-4 beta chain
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-DRB1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P13760 (Start-191)
      • variant (68)
      • variant (71-72)
      • variant (87)
  • Chain 'C':
    Compound: Citrullinated Vimentin
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: NAG, EDO, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4mdiA (A:)
ikeehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgal
aniavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvt
wlrngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwef
dtsgddddk

    Sequence, based on observed residues (ATOM records):
    >4mdiA (A:)
eehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgalan
iavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvtwl
rngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwefd

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4mdiB (B:)
gsgdtrprfleqvkhechffngtervrfldryfyhqeeyvrfdsdvgeyravtelgrpda
eywnsqkdilederaavdtycrhnygvvesftvqrrvypevtvypaktqplqhhnllvcs
vngfypgsievrwfrngqeektgvvstgliqngdwtfqtlvmletvprsgevytcqvehp
sltspltvewratggddddk

    Sequence, based on observed residues (ATOM records):
    >4mdiB (B:)
dtrprfleqvkhechffngtervrfldryfyhqeeyvrfdsdvgeyravtelgrpdaeyw
nsqkdilederaavdtycrhnygvvesftvqrrvypevtvypaktqplqhhnllvcsvng
fypgsievrwfrngqeektgvvstgliqngdwtfqtlvmletvprsgevytcqvehpslt
spltvewra

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >4mdiC (C:)
savrlrssvpgvr